TBGR-v2: an integrated pan-genome and evolutionary resource for Brassicaceae genomic research

Lusheng Guo; Zipeng Meng; Xiao Ma; Zhuo Liu; Chenhao Zhang; Jinghua He; Mengyao Shi; Chengcheng Zou; Rong Zhou; Xiaoming Song

doi:10.1016/j.jgg.2026.08.004

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TBGR-v2: an integrated pan-genome and evolutionary resource for Brassicaceae genomic research

doi: 10.1016/j.jgg.2026.08.004

a. School of Life Sciences/School of Basic Medical Sciences/Library, North China University of Science and Technology, Tangshan, Hebei 063210, China;
b. College of Horticulture, Nanjing Agricultural University, Nanjing 210095, China;
c. Key Laboratory for quality of salt alkali resistant TCM of Hebei Administration of TCM, North China University of Science and Technology, Tangshan 063210, China;
d. National Center of Technology Innovation for Comprehensive Utilization of Saline-Alkali Land, Dongying 257300, China

Funds:

This work was supported by the National Natural Science Foundation of China (32573037), Tangshan Talent Funding Program (B202305014), Tangshan Science and Technology Plan Project (24130219C), the Basic Research Expenses for Provincial Universities (JJC2024001), the S&T Program of Hebei (23372505D), and Hebei Natural Science Foundation (H2023209084).

Received Date: 2026-04-12
Accepted Date: 2026-08-04
Rev Recd Date: 2026-08-01

Available Online: 2026-08-12

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References(19)

References

Chen, H., Wang, T., He, X., Cai, X., Lin, R., Liang, J., Wu, J., King, G., Wang, X., 2022. BRAD V3.0: an upgraded Brassicaceae database. Nucleic Acids Res. 50, D1432-D1441.

Heng, S., He, J., Zhu, X., Cai, J., Fu, M., Zhang, S., Zeng, W., Xing, F., Mao, G., 2024. Genome wide identification of BjSWEET gene family and drought response analysis of BjSWEET12 and BjSWEET17 genes in Brassica juncea. BMC Plant Biol. 24, 1094.

Jiang, X., Hu, Q., Mei, D., Li, X., Xiang, L., Al-Shehbaz, I.A., Song, X., Liu, J., Lysak, M.A., Sun, P., 2025. Chromosome fusions shaped karyotype evolution and evolutionary relationships in the model family Brassicaceae. Nat. Commun. 16, 4631.

Li, J., Yang, X., Liu, F., Liu, X., Zhao, T., Yan, X., Pang, Q., 2023. Redox regulation of salt tolerance in Eutrema salsugineum by proteomics. Int. J. Mol. Sci. 24, 14518.

Li, Q., Fu, Y., Zhang, C., Zhang, G., Zhao, Y., Wang, Y., Dou, Y., Gao, L., Abdullah, S., Ma, X., et al., 2025. Deciphering the near-complete genome and conducting pan-genome analysis of Brassica oleracea. Hortic. Res. 12, uhaf189.

Liu, Z., Li, N., Yu, T., Wang, Z., Wang, J., Ren, J., He, J., Huang, Y., Shi, K., Yang, Q., et al., 2022. The Brassicaceae genome resource (TBGR): a comprehensive genome platform for Brassicaceae plants. Plant Physiol. 190, 226-237.

Liu, Z., Shen, S., Li, C., Zhang, C., Chen, X., Fu, Y., Yu, T., Zhou, R., Liu, D., Yang, Q., et al., 2025. SoIR: a comprehensive Solanaceae information resource for comparative and functional genomic study. Nucleic Acids Res. 53, D1623-D1632.

Liu, Z., Zhang, C., He, J., Li, C., Fu, Y., Zhou, Y., Cao, R., Liu, H., Song, X., 2024. plantGIR: a genomic database of plants. Hortic. Res. 11, uhae342.

Ma, W., Liu, Y., Wei, X., Zhang, X., Li, X., Liu, Z., Yuan, L., Li, G., Zhang, S., Yang, Q., et al., 2026. Gapless pangenome analyses reveal fast Brassica rapa subspeciation. Science 391, eady7590.

Song, X., Wei, Y., Xiao, D., Gong, K., Sun, P., Ren, Y., Yuan, J., Wu, T., Yang, Q., Li, X., et al., 2021. Brassica carinata genome characterization clarifies U’s triangle model of evolution and polyploidy in Brassica. Plant Physiol. 186, 388-406.

Walden, N., German, D.A., Wolf, E.M., Kiefer, M., Rigault, P., Huang, X.-C., Kiefer, C., Schmickl, R., Franzke, A., Neuffer, B., et al., 2020. Nested whole-genome duplications coincide with diversification and high morphological disparity in Brassicaceae. Nat. Commun. 11, 3795.

Wang, T., van Dijk, A.D.J., Cai, X., Wu, J., Bonnema, G., Wang, X., 2025. Brassica diversity through the lens of polyploidy: genomic evolution, introgression, and homoeologous exchange. Hortic. Plant J. 11, 1777-1790.

Yang, Z., Wang, S., Wei, L., Huang, Y., Liu, D., Jia, Y., Luo, C., Lin, Y., Liang, C., Hu, Y., et al., 2023. BnIR: a multi-omics database with various tools for Brassica napus research and breeding. Mol. Plant 16, 775-789.

Yu, T., Ma, X., Liu, Z., Su, T., Zhang, C., Guo, L., Meng, Z., Guo, D., Yao, N., Zhang, Y., et al., 2025. TVIR 2.0: an enhanced database of the vegetables information resources. Hortic. Res. 12, uhaf239.

Yuan, L., Wang, J., Zhang, H., Hou, J., Wang, W., Gao, X., Yang, Y., Wang, G., Li, M., Wu, J., et al., 2025. The wucai genome and DNA methylation regulation on the inner leaves’ yellowing response to low temperature. Hortic. Res. 12, uhaf231.

Yue, Z., Sun, H., Hu, Q., Mei, Y., Lei, J., Tao, P., Li, B., Zhao, Y., 2025. ABA-mediated ROS burst contributes to petiole spot formation in stored Chinese cabbage. Veg. Res. 5, e047.

Zhang, L., Tang, M., Zheng, Y., Xu, X., Qu, T., Liu, T., 2025. Analysis of gene expression changes and key factor functions in Agrobacterium-mediated genetic transformation in Brassica campestris ssp. chinensis. Veg. Res. 5, e039.

Zhang, L., Xiao, J., Liang, C., Chen, Y., Yu, C., Zhao, X., Li, J., Yan, M., Yang, Q., Chen, H., et al., 2024. BjuIR: a multi-omics database with various tools for accelerating functional genomics research in Brassica juncea. Plant Commun. 5, 100925.

Zhou, R., Qin, X., Hou, J., Liu, Y., 2024. Research progress on Brassicaceae plants: a bibliometrics analysis. Front. Plant Sci. 15, 1285050.

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