|
Abdelrahman, M., Nishiyama, R., Tran, C.D., Kusano, M., Nakabayashi, R., Okazaki, Y., Matsuda, F., Chavez Montes, R.A., Mostofa, M.G., Li, W., et al., 2021. Defective cytokinin signaling reprograms lipid and flavonoid gene-to-metabolite networks to mitigate high salinity in Arabidopsis. Proc. Natl. Acad. Sci. U. S. A. 118, e2105021118.
|
|
Albertos, P., Romero-Puertas, M.C., Tatematsu, K., Mateos, I., Sanchez-Vicente, I., Nambara, E., Lorenzo, O., 2015. S-nitrosylation triggers ABI5 degradation to promote seed germination and seedling growth. Nat. Commun. 6, 8669.
|
|
Ancin, M., Larraya, L., Florez-Sarasa, I., Benard, C., Fernandez-San Millan, A., Veramendi, J., Gibon, Y., Fernie, A.R., Aranjuelo, I., Farran, I., 2021. Overexpression of thioredoxin m in chloroplasts alters carbon and nitrogen partitioning in tobacco. J. Exp. Bot. 72, 4949-4964.
|
|
Anzalone, A.V., Randolph, P.B., Davis, J.R., Sousa, A.A., Koblan, L.W., Levy, J.M., Chen, P.J., Wilson, C., Newby, G.A., Raguram, A., et al., 2019. Search-and-replace genome editing without double-strand breaks or donor DNA. Nature 576, 149-157.
|
|
Arenas-Alfonseca, L., Yamada, M., Romero, L.C., Garcia, I., 2023. New insights on the role of β-cyanoalanine synthase CAS-C1 in root hair elongation through single-cell proteomics. Plants (Basel) 12, 4055.
|
|
Arnaud, D., Deeks, M.J., Smirnoff, N., 2023. Organelle-targeted biosensors reveal distinct oxidative events during pattern-triggered immune responses. Plant Physiol. 191, 2551-2569.
|
|
Astier, J., Gross, I., Durner, J., 2018. Nitric oxide production in plants: an update. J. Exp. Bot. 69, 3401-3411.
|
|
Bailly, C., 2019. The signalling role of ROS in the regulation of seed germination and dormancy. Biochem. J. 476, 3019-3032.
|
|
Balasubramanian, V.K., Purvine, S.O., Liang, Y., Kelly, R.T., Pasa-Tolic, L., Chrisler, W.B., Blumwald, E., Stewart, C.N., Zhu, Y., Ahkami, A.H., 2021. Cell-type-specific proteomics analysis of a small number of plant cells using laser capture microdissection and nanoPOTS. Curr. Protoc. 1, e153.
|
|
Balmant, K.M., Lawrence, S.R., 2nd, Duong, B.V., Zhu, F., Zhu, N., Nicklay, J., Chen, S., 2021. Guard cell redox proteomics reveals a role of lipid transfer protein in plant defense. J. Proteomics 242, 104247.
|
|
Bi, C., Ma, Y., Wu, Z., Yu, Y.T., Liang, S., Lu, K., Wang, X.F., 2017. Arabidopsis ABI5 plays a role in regulating ROS homeostasis by activating CATALASE 1 transcription in seed germination. Plant Mol. Biol. 94, 197-213.
|
|
Bi, G., Hu, M., Fu, L., Zhang, X., Zuo, J., Li, J., Yang, J., Zhou, J.M., 2022. The cytosolic thiol peroxidase PRXIIB is an intracellular sensor for H2O2 that regulates plant immunity through a redox relay. Nat. Plants 8, 1160-1175.
|
|
Boscari, A., Frendo, P., 2025. Redox metabolism and signalling in plants. J. Exp. Bot. 76, 3629-3633.
|
|
Boutin, C., Clement, C., Rivoal, J., 2024. Post-translational modifications to cysteine residues in plant proteins and their impact on the regulation of metabolism and signal transduction. Int. J. Mol. Sci. 25, 9845.
|
|
Cao, L., Karapetyan, S., Yoo, H., Chen, T., Mwimba, M., Zhang, X., Dong, X., 2024. H2O2 sulfenylates CHE, linking local infection to the establishment of systemic acquired resistance. Science 385, 1211-1217.
|
|
Carmody, M., Crisp, P.A., d’Alessandro, S., Ganguly, D., Gordon, M., Havaux, M., Albrecht-Borth, V., Pogson, B.J., 2016. Uncoupling high light responses from singlet oxygen retrograde signaling and spatial-temporal systemic acquired acclimation. Plant Physiol. 171, 1734-1749.
|
|
Chae, H.B., Bae, S.B., Paeng, S.K., Wi, S.D., Thi Phan, K.A., Lee, S.Y., 2024. S-nitrosylation switches the Arabidopsis redox sensor protein, QSOX1, from an oxidoreductase to a molecular chaperone under heat stress. Plant Physiol. Biochem. 206, 108219.
|
|
Chae, H.B., Kim, M.G., Kang, C.H., Park, J.H., Lee, E.S., Lee, S.U., Chi, Y.H., Paeng, S.K., Bae, S.B., Wi, S.D., et al., 2021. Redox sensor QSOX1 regulates plant immunity by targeting GSNOR to modulate ROS generation. Mol. Plant 14, 1312-1327.
|
|
Chen, L., Sun, S., Song, C.P., Zhou, J.M., Li, J., Zuo, J., 2022. Nitric oxide negatively regulates gibberellin signaling to coordinate growth and salt tolerance in Arabidopsis. J. Genet. Genomics 49, 756-765.
|
|
Chen, L., Wu, R., Feng, J., Feng, T., Wang, C., Hu, J., Zhan, N., Li, Y., Ma, X., Ren, B., et al., 2020a. Transnitrosylation mediated by the non-canonical catalase ROG1 regulates nitric oxide signaling in plants. Dev. Cell 53, 444-457.e5.
|
|
Chen, M.X., Yang, Y.N., Zheng, S.X., Xu, C., Wang, Y., Liu, J.S., Yang, W.D., Chye, M.L., Li, H.Y., 2013. A Vigna radiata 8S globulin α' promoter drives efficient expression of GUS in Arabidopsis cotyledonary embryos. J. Agric. Food Chem. 61, 6423-6429.
|
|
Chen, S., Jia, H., Wang, X., Li, J., Yang, J., Shi, W., Li, J.S., 2020b. Hydrogen sulfide positively regulates abscisic acid signaling through persulfidation of SnRK2.6 in guard cells. Mol. Plant 13, 732-744.
|
|
Chen, T., Li, S., Mu, X., Yang, T., Wang, L., Tian, M., Yu, M., Luo, L., Xie, Y., Xuan, W., et al., 2026. A coupled GSH/GSNOR system denitrosylates TRXh5 to allow activation of SA signalling by oxidative stress. Plant Cell Environ. 49, 2691-2705.
|
|
Chen, X., Xia, X., Guo, X., Zhou, Y., Shi, K., Zhou, J., Yu, J., 2016. Apoplastic H2O2 plays a critical role in axillary bud outgrowth by altering auxin and cytokinin homeostasis in tomato plants. New Phytol. 211, 1266-1278.
|
|
Chen, X., Xu, Q., Yue, Y., Duan, Y., Liu, H., Chen, X., Huang, J., Zheng, L., 2023. Comparative oxidation proteomics analyses suggest redox regulation of cytosolic translation in rice leaves upon Magnaporthe oryzae infection. Plant Commun. 4, 100550.
|
|
Choi, H., Kim, S., Mukhopadhyay, P., Cho, S., Woo, J., Storz, G., Ryu, S.E., 2001. Structural basis of the redox switch in the OxyR transcription factor. Cell 105, 103-113.
|
|
Chu, J., Monte, I., DeFalco, T.A., Koster, P., Derbyshire, P., Menke, F.L.H., Zipfel, C., 2023. Conservation of the PBL-RBOH immune module in land plants. Curr. Biol. 33, 1130-1137.e5.
|
|
Clouse, S.D., 2011. Brassinosteroid signal transduction: from receptor kinase activation to transcriptional networks regulating plant development. Plant Cell 23, 1219-1230.
|
|
Cobley, J.N., 2024. Exploring the unmapped cysteine redox proteoform landscape. Am. J. Physiol. Cell Physiol. 327, C844-C866.
|
|
Correa-Aragunde, N., Foresi, N., Delledonne, M., Lamattina, L., 2013. Auxin induces redox regulation of ascorbate peroxidase 1 activity by S-nitrosylation/denitrosylation balance resulting in changes of root growth pattern in Arabidopsis. J. Exp. Bot. 64, 3339-3349.
|
|
Cremers, C.M., Jakob, U., 2013. Oxidant sensing by reversible disulfide bond formation. J. Biol. Chem. 288, 26489-26496.
|
|
Cui, B., Ma, X., Li, Y., Zhou, Y., Ju, X., Hussain, A., Umbreen, S., Yuan, B., Tabassum, A., Lubega, J., et al., 2021. Perturbations in nitric oxide homeostasis promote Arabidopsis disease susceptibility towards Phytophthora parasitica. Mol. Plant Pathol. 22, 1134-1148.
|
|
Dard, A., Van Breusegem, F., Mhamdi, A., 2024. Redox regulation of gene expression: proteomics reveals multiple previously undescribed redox-sensitive cysteines in transcription complexes and chromatin modifiers. J. Exp. Bot. 75, 4476-4493.
|
|
Datta, R., Kumar, D., Sultana, A., Hazra, S., Bhattacharyya, D., Chattopadhyay, S., 2015. Glutathione regulates 1-aminocyclopropane-1-carboxylate synthase transcription via WRKY33 and 1-aminocyclopropane-1-carboxylate oxidase by modulating messenger RNA stability to induce ethylene synthesis during stress. Plant Physiol. 169, 2963-2981.
|
|
David, L., Kang, J., Dufresne, D., Zhu, D., Chen, S., 2020. Multi-omics revealed molecular mechanisms underlying guard cell systemic acquired resistance. Int. J. Mol. Sci. 22, 191.
|
|
De Smet, B., Willems, P., Fernandez-Fernandez, A.D., Alseekh, S., Fernie, A.R., Messens, J., Van Breusegem, F., 2019. In vivo detection of protein cysteine sulfenylation in plastids. Plant J. 97, 765-778.
|
|
Denjalli, I., Knieper, M., Uthoff, J., Vogelsang, L., Kumar, V., Seidel, T., Dietz, K.J., 2024. The centrality of redox regulation and sensing of reactive oxygen species in abiotic and biotic stress acclimatization. J. Exp. Bot. 75, 4494-4511.
|
|
Desikan, R., Griffiths, R., Hancock, J., Neill, S., 2002. A new role for an old enzyme: nitrate reductase-mediated nitric oxide generation is required for abscisic acid-induced stomatal closure in Arabidopsis thaliana. Proc. Natl. Acad. Sci. U. S. A. 99, 16314-16318.
|
|
Despres, C., Chubak, C., Rochon, A., Clark, R., Bethune, T., Desveaux, D., Fobert, P.R., 2003. The Arabidopsis NPR1 disease resistance protein is a novel cofactor that confers redox regulation of DNA binding activity to the basic domain/leucine zipper transcription factor TGA1. Plant Cell 15, 2181-2191.
|
|
DiGiovanni, L.F., Khroud, P.K., Carmichael, R.E., Schrader, T.A., Gill, S.K., Germain, K., Jomphe, R.Y., Wiesinger, C., Boutry, M., Kamoshita, M., et al., 2025. ROS transfer at peroxisome-mitochondria contact regulates mitochondrial redox. Science 389, 157-162.
|
|
Ding, M., Zhou, Y., Becker, D., Yang, S., Krischke, M., Scherzer, S., Yu-Strzelczyk, J., Mueller, M.J., Hedrich, R., Nagel, G., et al., 2024. Probing plant signal processing optogenetically by two channelrhodopsins. Nature 633, 872-877.
|
|
Ding, X., Jimenez-Gongora, T., Krenz, B., Lozano-Duran, R., 2019. Chloroplast clustering around the nucleus is a general response to pathogen perception in Nicotiana benthamiana. Mol. Plant Pathol. 20, 1298-1306.
|
|
Duan, Q., Liu, M.J., Kita, D., Jordan, S.S., Yeh, F.J., Yvon, R., Carpenter, H., Federico, A.N., Garcia-Valencia, L.E., Eyles, S.J., et al., 2020. FERONIA controls pectin- and nitric oxide-mediated male-female interaction. Nature 579, 561-566.
|
|
Eckardt, N.A., 2007. GA perception and signal transduction: molecular interactions of the GA receptor GID1 with GA and the DELLA protein SLR1 in rice. Plant Cell 19, 2095-2097.
|
|
Ehrary, A., Rosas, M., Carpinelli, S., Davalos, O., Cowling, C., Fernandez, F., Escobar, M., 2020. Glutaredoxin AtGRXS8 represses transcriptional and developmental responses to nitrate in Arabidopsis thaliana roots. Plant Direct 4, e00227.
|
|
El-Kereamy, A., Bi, Y.M., Mahmood, K., Ranathunge, K., Yaish, M.W., Nambara, E., Rothstein, S.J., 2015. Overexpression of the CC-type glutaredoxin, OsGRX6 affects hormone and nitrogen status in rice plants. Front. Plant Sci. 6, 934.
|
|
El-Maarouf-Bouteau, H., Bailly, C., 2008. Oxidative signaling in seed germination and dormancy. Plant Signal Behav. 3, 175-182.
|
|
Exposito-Rodriguez, M., Laissue, P.P., Yvon-Durocher, G., Smirnoff, N., Mullineaux, P.M., 2017. Photosynthesis-dependent H2O2 transfer from chloroplasts to nuclei provides a high-light signalling mechanism. Nat. Commun. 8, 49.
|
|
Fang, H., Wu, X., Huang, D., Chen, X., Liu, Z., Pan, X., Chen, H., Zheng, D., Ma, C., Hou, X., et al., 2026. Hydrogen gas enhances salinity tolerance in tomato seedlings by regulating the S-nitrosylation of MEK1. Plant Biotechnol. J.
|
|
Feechan, A., Kwon, E., Yun, B.W., Wang, Y., Pallas, J.A., Loake, G.J., 2005. A central role for S-nitrosothiols in plant disease resistance. Proc. Natl. Acad. Sci. U. S. A. 102, 8054-8059.
|
|
Feng, J., Chen, L., Zuo, J., 2019. Protein S-nitrosylation in plants: current progresses and challenges. J. Integr. Plant Biol. 61, 1206-1223.
|
|
Feng, J., Wang, C., Chen, Q., Chen, H., Ren, B., Li, X., Zuo, J., 2013. S-nitrosylation of phosphotransfer proteins represses cytokinin signaling. Nat. Commun. 4, 1529.
|
|
Fernandez-Marcos, M., Sanz, L., Lewis, D.R., Muday, G.K., Lorenzo, O., 2011. Nitric oxide causes root apical meristem defects and growth inhibition while reducing PIN-FORMED 1 (PIN1)-dependent acropetal auxin transport. Proc. Natl. Acad. Sci. U. S. A. 108, 18506-18511.
|
|
Fichman, Y., Mittler, R., 2020. Rapid systemic signaling during abiotic and biotic stresses: is the ROS wave master of all trades? Plant J. 102, 887-896.
|
|
Fichman, Y., Xiong, H., Sengupta, S., Morrow, J., Loog, H., Azad, R.K., Hibberd, J.M., Liscum, E., Mittler, R., 2023. Phytochrome B regulates reactive oxygen signaling during abiotic and biotic stress in plants. New Phytol. 237, 1711-1727.
|
|
Fichman, Y., Zandalinas, S.I., Peck, S., Luan, S., Mittler, R., 2022. HPCA1 is required for systemic reactive oxygen species and calcium cell-to-cell signaling and plant acclimation to stress. Plant Cell 34, 4453-4471.
|
|
Finkel, T., Holbrook, N.J., 2000. Oxidants, oxidative stress and the biology of ageing. Nature 408, 239-247.
|
|
Frungillo, L., Skelly, M.J., Loake, G.J., Spoel, S.H., Salgado, I., 2014. S-nitrosothiols regulate nitric oxide production and storage in plants through the nitrogen assimilation pathway. Nat. Commun. 5, 5401.
|
|
Fu, Z.W., Feng, Y.R., Gao, X., Ding, F., Li, J.H., Yuan, T.T., Lu, Y.T., 2023. Salt stress-induced chloroplastic hydrogen peroxide stimulates pdTPI sulfenylation and methylglyoxal accumulation. Plant Cell 35, 1593-1616.
|
|
Fujita, S., De Bellis, D., Edel, K.H., Koster, P., Andersen, T.G., Schmid-Siegert, E., Denervaud Tendon, V., Pfister, A., Marhavy, P., Ursache, R., et al., 2020. SCHENGEN receptor module drives localized ROS production and lignification in plant roots. EMBO J. 39, e103894.
|
|
Garcia-Mata, C., Wang, J., Gajdanowicz, P., Gonzalez, W., Hills, A., Donald, N., Riedelsberger, J., Amtmann, A., Dreyer, I., Blatt, M.R., 2010. A minimal cysteine motif required to activate the SKOR K+ channel of Arabidopsis by the reactive oxygen species H2O2. J. Biol. Chem. 285, 29286-29294.
|
|
Ge, Z., Wu, T., Lin, Z., Lai, S., Chen, G., Xiao, L., Zhang, J., Zhang, K., Zhou, H., Xie, Y., 2026. The oxidation of ABI4 by RBOHD-derived reactive oxygen species integrates redox signaling into abscisic-acid and drought-stress responses. aBIOTECH 7, 100037.
|
|
Geigenberger, P., Kolbe, A., Tiessen, A., 2005. Redox regulation of carbon storage and partitioning in response to light and sugars. J. Exp. Bot. 56, 1469-1479.
|
|
Gilroy, S., Bialasek, M., Suzuki, N., Gorecka, M., Devireddy, A.R., Karpinski, S., Mittler, R., 2016. ROS, calcium, and electric signals: key mediators of rapid systemic signaling in plants. Plant Physiol. 171, 1606-1615.
|
|
Gong, B., Shi, Q., 2019. Identifying S-nitrosylated proteins and unraveling S-nitrosoglutathione reductase-modulated sodic alkaline stress tolerance in Solanum lycopersicum L. Plant Physiol. Biochem. 142, 84-93.
|
|
Guo, T., Wei, J., Li, X., Yu, J., 2024. Environmental context of phenotypic plasticity in flowering time in sorghum and rice. J. Exp. Bot. 75, 1004-1015.
|
|
Gutsche, N., Zachgo, S., 2016. The N-terminus of the floral Arabidopsis TGA transcription factor PERIANTHIA mediates redox-sensitive DNA-binding. PLoS One 11, e0153810.
|
|
Hao, D., Xiao, Z., Yan, W., Pan, C., Yang, Y., Song, W., Chen, Z., Xing, Y., Jin, L., Peng, Y., et al., 2026. Sensing endoplasmic reticulum redox state by ethylene receptors. Cell 189, 1-19.
|
|
Hashida, S.N., Kawai-Yamada, M., 2019. Detection of disulfides in protein extracts of Arabidopsis thaliana using monobromobimane (mBBr). Bio Protoc. 9, e3183.
|
|
Haslekas, C., Viken, M.K., Grini, P.E., Nygaard, V., Nordgard, S.H., Meza, T.J., Aalen, R.B., 2003. Seed 1-cysteine peroxiredoxin antioxidants are not involved in dormancy, but contribute to inhibition of germination during stress. Plant Physiol. 133, 1148-1157.
|
|
He, Q., Yuan, R., Zhang, T., An, F., Wang, N., Lan, J., Wang, X., Zhang, Z., Pan, Y., Wang, X., et al., 2022. Arabidopsis TIE1 and TIE2 transcriptional repressors dampen cytokinin response during root development. Sci. Adv. 8, eabn5057.
|
|
Hernandez-Garcia, J., Briones-Moreno, A., Blazquez, M.A., 2021. Origin and evolution of gibberellin signaling and metabolism in plants. Semin. Cell Dev. Biol. 109, 46-54.
|
|
Herrera-Vasquez, A., Salinas, P., Holuigue, L., 2015. Salicylic acid and reactive oxygen species interplay in the transcriptional control of defense genes expression. Front. Plant Sci. 6, 171.
|
|
Hou, L.Y., Lehmann, M., Geigenberger, P., 2021. Thioredoxin h2 and o1 show different subcellular localizations and redox-active functions, and are extrachloroplastic factors influencing photosynthetic performance in fluctuating light. Antioxidants (Basel) 10, 705.
|
|
Hsiao, Y.C., Shiue, S.Y., Yen, M.R., Lai, J.K., Yamada, M., 2025. The peptide hormone RGF1 modulates PLETHORA2 stability via reactive oxygen species-dependent regulation of a cysteine residue. Plant Physiol. 198, kiaf244.
|
|
Hu, H., Qin, M., Zhang, J., Jiang, J., Su, Z., Guan, L., Qu, Z., Liu, C., Cai, X., Ren, Z., et al., 2025a. H2S-mediated protein S-sulfhydration modulates infectivity and autophagy in the rice blast fungus. Nat. Commun. 16, 6222.
|
|
Hu, J., Dong, L., Outten, C.E., 2008. The redox environment in the mitochondrial intermembrane space is maintained separately from the cytosol and matrix. J. Biol. Chem. 283, 29126-29134.
|
|
Hu, J., Huang, X., Chen, L., Sun, X., Lu, C., Zhang, L., Wang, Y., Zuo, J., 2015. Site-specific nitrosoproteomic identification of endogenously S-nitrosylated proteins in Arabidopsis. Plant Physiol. 167, 1731-1746.
|
|
Hu, M., Liang, Y., Meng, J.G., He, K., Yang, W.C., Bi, G., Zhou, J.M., 2025b. Real-time monitoring of subcellular H2O2 dynamics by genetically encoded probe roGFP2-PRXIIB. J. Integr. Plant Biol.
|
|
Huang, J., De Veirman, L., Van Breusegem, F., 2024. Cysteine thiol sulfinic acid in plant stress signaling. Plant Cell Environ. 47, 2766-2779.
|
|
Huang, J., Willems, P., Wei, B., Tian, C., Ferreira, R.B., Bodra, N., Gache, S.A.M., Wahni, K., Liu, K., Vertommen, D., et al., 2019. Mining for protein S-sulfenylation in Arabidopsis uncovers redox-sensitive sites. Proc. Natl. Acad. Sci. U. S. A. 116, 21256-21261.
|
|
Huang, J., Yang, L., Yang, L., Wu, X., Cui, X., Zhang, L., Hui, J., Zhao, Y., Yang, H., Liu, S., et al., 2023. Stigma receptors control intraspecies and interspecies barriers in Brassicaceae. Nature 614, 303-308.
|
|
Huner, N.P., Bode, R., Dahal, K., Hollis, L., Rosso, D., Krol, M., Ivanov, A.G., 2012. Chloroplast redox imbalance governs phenotypic plasticity: the "grand design of photosynthesis" revisited. Front. Plant Sci. 3, 255.
|
|
Hunter, T., 2007. The age of crosstalk: phosphorylation, ubiquitination, and beyond. Mol. Cell 28, 730-738.
|
|
Iglesias, M.J., Terrile, M.C., Correa-Aragunde, N., Colman, S.L., Izquierdo-Alvarez, A., Fiol, D.F., Paris, R., Sanchez-Lopez, N., Marina, A., Villalobos, L.I.A.C., et al., 2018. Regulation of SCFTIR1/AFBs E3 ligase assembly by S-nitrosylation of Arabidopsis SKP1-like1 impacts on auxin signaling. Redox Biol. 18, 200-210.
|
|
Imlay, J.A., 2003. Pathways of oxidative damage. Annu. Rev. Microbiol. 57, 395-418.
|
|
Jia, H., Hu, Y., Fan, T., Li, J., 2015. Hydrogen sulfide modulates actin-dependent auxin transport via regulating ABPs results in changing of root development in Arabidopsis. Sci. Rep. 5, 8251.
|
|
Jia, H.L., Chen, S.S., Liu, D., Liesche, J., Shi, C., Wang, J., Ren, M.J., Wang, X.F., Yang, J., Shi, W., et al., 2018. Ethylene-induced hydrogen sulfide negatively regulates ethylene biosynthesis by persulfidation of ACO in tomato under osmotic stress. Front. Plant Sci. 9, 1517.
|
|
Jimenez, A., Lopez-Martinez, R., Marti, M.C., Cano-Yelo, D., Sevilla, F., 2024. The integration of TRX/GRX systems and phytohormonal signalling pathways in plant stress and development. Plant Physiol. Biochem. 207, 108298.
|
|
Jing, H., Yang, X., Emenecker, R.J., Feng, J., Zhang, J., Alves de Figueiredo, M.R., Chaisupa, P., Wright, R.C., Holehouse, A.S., Strader, L.C., et al., 2023. Nitric oxide-mediated S-nitrosylation of IAA17 protein in intrinsically disordered region represses auxin signaling. J. Genet. Genomics 50, 473-485.
|
|
Jumper, J., Evans, R., Pritzel, A., Green, T., Figurnov, M., Ronneberger, O., Tunyasuvunakool, K., Bates, R., Zidek, A., Potapenko, A., et al., 2021. Highly accurate protein structure prediction with AlphaFold. Nature 596, 583-589.
|
|
Kadota, Y., Shirasu, K., Zipfel, C., 2015. Regulation of the NADPH oxidase RBOHD during plant immunity. Plant Cell Physiol. 56, 1472-1480.
|
|
Kamiya, T., Borghi, M., Wang, P., Danku, J.M., Kalmbach, L., Hosmani, P.S., Naseer, S., Fujiwara, T., Geldner, N., Salt, D.E., 2015. The MYB36 transcription factor orchestrates Casparian strip formation. Proc. Natl. Acad. Sci. U. S. A. 112, 10533-10538.
|
|
Karpinska, B., Foyer, C.H., 2024. Superoxide signalling and antioxidant processing in the plant nucleus. J. Exp. Bot. 75, 4599-4610.
|
|
Khan, S., Alvi, A.F., Saify, S., Iqbal, N., Khan, N.A., 2024. The ethylene biosynthetic enzymes, 1-aminocyclopropane-1-carboxylate (ACC) synthase (ACS) and ACC oxidase (ACO): the less explored players in abiotic stress tolerance. Biomolecules 14, 90.
|
|
Kinkema, M., Fan, W., Dong, X., 2000. Nuclear localization of NPR1 is required for activation of PR gene expression. Plant Cell 12, 2339-2350.
|
|
Kirchsteiger, K., Ferrandez, J., Pascual, M.B., Gonzalez, M., Cejudo, F.J., 2012. NADPH thioredoxin reductase C is localized in plastids of photosynthetic and nonphotosynthetic tissues and is involved in lateral root formation in Arabidopsis. Plant Cell 24, 1534-1548.
|
|
Kleffmann, T., Russenberger, D., von Zychlinski, A., Christopher, W., Sjolander, K., Gruissem, W., Baginsky, S., 2004. The Arabidopsis thaliana chloroplast proteome reveals pathway abundance and novel protein functions. Curr. Biol. 14, 354-362.
|
|
Klomsiri, C., Karplus, P.A., Poole, L.B., 2011. Cysteine-based redox switches in enzymes. Antioxid. Redox Signal. 14, 1065-1077.
|
|
Kong, L., Ma, X., Zhang, C., Kim, S.I., Li, B., Xie, Y., Yeo, I.C., Thapa, H., Chen, S., Devarenne, T.P., et al., 2024. Dual phosphorylation of DGK5-mediated PA burst regulates ROS in plant immunity. Cell 187, 609-623.e21.
|
|
Kosower, N.S., Kosower, E.M., Newton, G.L., Ranney, H.M., 1979. Bimane fluorescent labels: labeling of normal human red cells under physiological conditions. Proc. Natl. Acad. Sci. U. S. A. 76, 3382-3386.
|
|
Kwak, J.M., Mori, I.C., Pei, Z.M., Leonhardt, N., Torres, M.A., Dangl, J.L., Bloom, R.E., Bodde, S., Jones, J.D., Schroeder, J.I., 2003. NADPH oxidase AtrbohD and AtrbohF genes function in ROS-dependent ABA signaling in Arabidopsis. EMBO J. 22, 2623-2633.
|
|
Kwon, E., Feechan, A., Yun, B.W., Hwang, B.H., Pallas, J.A., Kang, J.G., Loake, G.J., 2012. AtGSNOR1 function is required for multiple developmental programs in Arabidopsis. Planta 236, 887-900.
|
|
Lal, M.K., Tiwari, R.K., Gahlaut, V., Mangal, V., Kumar, A., Singh, M.P., Paul, V., Kumar, S., Singh, B., Zinta, G., 2022. Physiological and molecular insights on wheat responses to heat stress. Plant Cell Rep. 41, 501-518.
|
|
Lee, E.S., Park, J.H., Wi, S.D., Kang, C.H., Chi, Y.H., Chae, H.B., Paeng, S.K., Ji, M.G., Kim, W.Y., Kim, M.G., et al., 2021. Redox-dependent structural switch and CBF activation confer freezing tolerance in plants. Nat. Plants 7, 914-922.
|
|
Lee, Y., Rubio, M.C., Alassimone, J., Geldner, N., 2013. A mechanism for localized lignin deposition in the endodermis. Cell 153, 402-412.
|
|
Li, H., Ma, T., Remsberg, J.R., Won, S.J., DeMeester, K.E., Njomen, E., Ogasawara, D., Zhao, K.T., Huang, T.P., Lu, B., et al., 2023. Assigning functionality to cysteines by base editing of cancer dependency genes. Nat. Chem. Biol. 19, 1320-1330.
|
|
Li, H., Wang, X., Liu, Y., Zhang, P., Chen, F., Zhang, N., Zhao, B., Guo, Y.D., 2024. Cysteine thiol-based oxidative post-translational modifications fine-tune protein functions in plants. Agronomy 14, 2757.
|
|
Li, X., Gluth, A., Zhang, T., Qian, W., 2023. Thiol redox proteomics: characterization of thiol-based post-translational modifications. Proteomics 23, 2200194.
|
|
Li, X., Wu, M.E., Qiao, Z., Huang, J., Zhang, J., Ding, Y., Zhu, J., Xu, J., Huang, Y., Li, W., et al., 2026. Natural negative feedback loops confer indica-japonica differentiation for grain size homeostasis in rice. Adv. Sci. 13, e16180.
|
|
Li, Y., Chen, L., Mu, J., Zuo, J., 2013. LESION SIMULATING DISEASE1 interacts with catalases to regulate hypersensitive cell death in Arabidopsis. Plant Physiol. 163, 1059-1070.
|
|
Liebthal, M., Struve, M., Li, X., Hertle, Y., Maynard, D., Hellweg, T., Viehhauser, A., Dietz, K.J., 2016. Redox-dependent conformational dynamics of decameric 2-cysteine peroxiredoxin and its interaction with cyclophilin 20-3. Plant Cell Physiol. 57, 1415-1425.
|
|
Lin, W., Shang, J.X., Li, X.Y., Zhou, X.F., Zhao, L.Q., 2025. Nitric oxide regulates multiple signal pathways in plants via protein S-nitrosylation. Curr. Issues Mol. Biol. 47, 407.
|
|
Lindermayr, C., Saalbach, G., Bahnweg, G., Durner, J., 2006. Differential inhibition of Arabidopsis methionine adenosyltransferases by protein S-nitrosylation. J. Biol. Chem. 281, 4285-4291.
|
|
Lindermayr, C., Sell, S., Muller, B., Leister, D., Durner, J., 2010. Redox regulation of the NPR1-TGA1 system of Arabidopsis thaliana by nitric oxide. Plant Cell 22, 2894-2907.
|
|
Liu, L., Hao, J., Huang, K., Duan, P., Zhang, B., Chi, Z., Yao, X., Li, Y., 2025a. Redox regulation of G protein oligomerization and signaling by the glutaredoxin WG1 controls grain size in rice. EMBO J. 44, 3742-3763.
|
|
Liu, Y., Xu, L., Wu, M., Wang, J., Qiu, D., Lan, J., Lu, J., Zhang, Y., Li, X., Zhang, Y., 2025b. Three-step biosynthesis of salicylic acid from benzoyl-CoA in plants. Nature 645, 201-207.
|
|
Liu, M., Cao, B., Wei, J.W., Gong, B., 2024a. Redesigning a S-nitrosylated pyruvate-dependent GABA transaminase 1 to generate high-malate and saline-alkali-tolerant tomato. New Phytol. 242, 2148-2162.
|
|
Liu, M., Shan, Q., Ding, E., Gu, T., Gong, B., 2023a. Karrikin increases tomato cold tolerance via strigolactone and the abscisic acid signaling network. Plant Sci. 332, 111720.
|
|
Liu, M., Wei, J.W., Liu, W., Gong, B., 2023b. S-nitrosylation of ACO homolog 4 improves ethylene synthesis and salt tolerance in tomato. New Phytol. 239, 159-173.
|
|
Liu, P., Zhang, H., Wang, H., Xia, Y., 2014. Identification of redox-sensitive cysteines in the Arabidopsis proteome using OxiTRAQ, a quantitative redox proteomics method. Proteomics 14, 750-762.
|
|
Liu, S., Fu, H., Jiang, J., Chen, Z., Gao, J., Shu, H., Zhang, S., Yang, C., Liu, J., 2019a. Overexpression of a CPYC-type glutaredoxin, OsGrxC2.2, causes abnormal embryos and an increased grain weight in rice. Front. Plant Sci. 10, 848.
|
|
Liu, W., Wei, J.W., Shan, Q., Liu, M., Xu, J., Gong, B., 2024b. Genetic engineering of drought- and salt-tolerant tomato via Δ1-pyrroline-5-carboxylate reductase S-nitrosylation. Plant Physiol. 195, 1038-1052.
|
|
Liu, W.C., Song, R.F., Zheng, S.Q., Li, T.T., Zhang, B.L., Gao, X., Lu, Y.T., 2022. Coordination of plant growth and abiotic stress responses by tryptophan synthase β subunit 1 through modulation of tryptophan and ABA homeostasis in Arabidopsis. Mol. Plant 15, 973-990.
|
|
Liu, Z., Cao, C., Li, Y., Yang, G., Pei, Y., 2019b. Light regulates hydrogen sulfide signalling during skoto- and photo-morphogenesis in foxtail millet. Funct. Plant Biol. 46, 916-924.
|
|
Lohani, N., Singh, M.B., Bhalla, P.L., 2022. Biological parts for engineering abiotic stress tolerance in plants. BioDes Res. 2022, 9819314.
|
|
Lu, B., Wang, S., Feng, H., Wang, J., Zhang, K., Li, Y., Wu, P., Zhang, M., Xia, Y., Peng, C., et al., 2024. FERONIA-mediated TIR1/AFB2 oxidation stimulates auxin signaling in Arabidopsis. Mol. Plant 17, 772-787.
|
|
Lu, Q., Houbaert, A., Ma, Q., Huang, J., Sterck, L., Zhang, C., Benjamins, R., Coppens, F., Van Breusegem, F., Russinova, E., 2022. Adenosine monophosphate deaminase modulates BIN2 activity through hydrogen peroxide-induced oligomerization. Plant Cell 34, 3844-3859.
|
|
Ma, T., Xu, S., Wang, Y., Zhang, L., Liu, Z., Liu, D., Jin, Z., Pei, Y., 2024. Exogenous hydrogen sulphide promotes plant flowering through the Arabidopsis splicing factor AtU2AF65a. Plant Cell Environ. 47, 1782-1796.
|
|
Ma, X., Zhang, L., Pei, Z., Zhang, L., Liu, Z., Liu, D., Hao, X., Jin, Z., Pei, Y., 2021. Hydrogen sulfide promotes flowering in heading Chinese cabbage by S-sulfhydration of BraFLCs. Hortic. Res. 8, 19.
|
|
Ma, Y., Peng, F., Zhao, R., Li, Y., Qian, J., Wang, Y., Sun, G., Meng, J., Li, J., Kang, Z., et al., 2026. Hydrogen sulfide promotes wheat immunity against stripe rust through TaATG6c persulfidation. Stress Biol. 6, 16.
|
|
Ma, Y., Szostkiewicz, I., Korte, A., Moes, D., Yang, Y., Christmann, A., Grill, E., 2009. Regulators of PP2C phosphatase activity function as abscisic acid sensors. Science 324, 1064-1068.
|
|
Mann, M., Jensen, O.N., 2003. Proteomic analysis of post-translational modifications. Nat. Biotechnol. 21, 255-261.
|
|
Mao, G., Wang, R., Guan, Y., Liu, Y., Zhang, S., 2011. Sulfurtransferases 1 and 2 play essential roles in embryo and seed development in Arabidopsis thaliana. J. Biol. Chem. 286, 7548-7557.
|
|
Martins, L., Trujillo-Hernandez, J.A., Reichheld, J.P., 2018. Thiol based redox signaling in plant nucleus. Front. Plant Sci. 9, 1089.
|
|
Meng, F., Xiang, D., Bu, Z., Lin, R., Sun, X., Xu, J., Wu, Y., Liu, Y., Wu, Z., Mo, X., et al., 2025. H2O2-mediated oxidation of PHOSPHATE STARVATION RESPONSE2 promotes adaptation to low phosphate in rice. Nat. Commun. 16, 8760.
|
|
Meng, Y., Zhang, L., Zhang, L., Wang, Z., Wang, X., Li, C., Chen, Y., Shang, S., Li, L., 2022. CysModDB: a comprehensive platform with the integration of manually curated resources and analysis tools for cysteine posttranslational modifications. Brief. Bioinform. 23, bbac460.
|
|
Meyer, A.J., Riemer, J., Rouhier, N., 2019. Oxidative protein folding: state-of-the-art and current avenues of research in plants. New Phytol. 221, 1230-1246.
|
|
Michelet, L., Zaffagnini, M., Morisse, S., Sparla, F., Perez-Perez, M.E., Francia, F., Danon, A., Marchand, C.H., Fermani, S., Trost, P., et al., 2013. Redox regulation of the Calvin-Benson cycle: something old, something new. Front. Plant Sci. 4, 470.
|
|
Miller, G., Schlauch, K., Tam, R., Cortes, D., Torres, M.A., Shulaev, V., Dangl, J.L., Mittler, R., 2009. The plant NADPH oxidase RBOHD mediates rapid systemic signaling in response to diverse stimuli. Sci. Signal. 2, ra45.
|
|
Mittler, R., Zandalinas, S.I., Fichman, Y., Van Breusegem, F., 2022. Reactive oxygen species signalling in plant stress responses. Nat. Rev. Mol. Cell Biol. 23, 663-679.
|
|
Mohanty, D., Pelaez-Vico, M.A., Myers, R.J., Sanchez-Vicente, M.I., Lorenzo, O., Mittler, R., 2025. Aboveground whole-plant live imaging method for nitric oxide (NO) reveals an intricate relationship between NO and H2O2. New Phytol. 247, 2473-2483.
|
|
Moon, J.C., Lee, S., Shin, S.Y., Chae, H.B., Jung, Y.J., Jung, H.S., Lee, K.O., Lee, J.R., Lee, S.Y., 2015. Overexpression of Arabidopsis NADPH-dependent thioredoxin reductase C (AtNTRC) confers freezing and cold shock tolerance to plants. Biochem. Biophys. Res. Commun. 463, 1225-1229.
|
|
Moore, M., Wesemann, C., Gossmann, N., Sahm, A., Kruger, J., Sczyrba, A., Dietz, K.J., 2020. ConCysFind: a pipeline tool to predict conserved amino acids of protein sequences across the plant kingdom. BMC Bioinformatics 21, 490.
|
|
Morita, S., Yamashita, Y., Fujiki, M., Todaka, R., Nishikawa, Y., Hosoki, A., Yabe, C., Nakamura, J., Kawamura, K., Suwastika, I.N., et al., 2015. Expression of a rice glutaredoxin in aleurone layers of developing and mature seeds: subcellular localization and possible functions in antioxidant defense. Planta 242, 1195-1206.
|
|
Moseler, A., Dhalleine, T., Rouhier, N., Couturier, J., 2021. Arabidopsis thaliana 3-mercaptopyruvate sulfurtransferases interact with and are protected by reducing systems. J. Biol. Chem. 296, 100429.
|
|
Moseler, A., Reyes-Hernandez, B.J., 2025. From peptides to patterning: redox control of the master regulator PLT2 in Arabidopsis roots. Plant Physiol. 198, kiaf264.
|
|
Moseler, A., 2025. Holding all the CARDs: quinone-induced oxidation and phosphorylation of GRXC1 impacts root growth. Plant Physiol. 199, kiaf450.
|
|
Mou, Z., Fan, W., Dong, X., 2003. Inducers of plant systemic acquired resistance regulate NPR1 function through redox changes. Cell 113, 935-944.
|
|
Mrozek, P., Grunewald, S., Treffon, K., Poschmann, G., Rabe von Pappenheim, F., Tittmann, K., Gatz, C., 2025. Molecular basis for the enzymatic inactivity of class III glutaredoxin ROXY9 on standard glutathionylated substrates. Nat. Commun. 16, 589.
|
|
Muller, K., Linkies, A., Vreeburg, R.A., Fry, S.C., Krieger-Liszkay, A., Leubner-Metzger, G., 2009. In vivo cell wall loosening by hydroxyl radicals during cress seed germination and elongation growth. Plant Physiol. 150, 1855-1865.
|
|
Munir, A., Min, C.W., Wang, Y., Kim, S.T., Gupta, R., 2025. S-nitrosoproteome analysis of rice leaves highlights the possible roles of superoxide dismutase in resistance against Magnaporthe oryzae. Physiol. Plant. 177, e70515.
|
|
Murmu, J., Bush, M.J., DeLong, C., Li, S., Xu, M., Khan, M., Malcolmson, C., Fobert, P.R., Zachgo, S., Hepworth, S.R., 2010. Arabidopsis basic leucine-zipper transcription factors TGA9 and TGA10 interact with floral glutaredoxins ROXY1 and ROXY2 and are redundantly required for anther development. Plant Physiol. 154, 1492-1504.
|
|
Nejamkin, A., Del Castello, F., Lamattina, L., Correa-Aragunde, N., Foresi, N., 2025. Nitric oxide is required for primary nitrate response in Arabidopsis: evidence for S-nitrosation of NLP7. Antioxid. Redox Signal. 42, 280-291.
|
|
Ni, M., Zhang, L., Shi, Y.F., Wang, C., Lu, Y., Pan, J., Liu, J.Z., 2017. Excessive cellular S-nitrosothiol impairs endocytosis of auxin efflux transporter PIN2. Front. Plant Sci. 8, 1988.
|
|
Niemeyer, J., Scheuring, D., Oestreicher, J., Morgan, B., Schroda, M., 2021. Real-time monitoring of subcellular H2O2 distribution in Chlamydomonas reinhardtii. Plant Cell 33, 2935-2949.
|
|
Nietzel, T., Elsasser, M., Ruberti, C., Steinbeck, J., Ugalde, J.M., Fuchs, P., Wagner, S., Ostermann, L., Moseler, A., Lemke, P., et al., 2019. The fluorescent protein sensor roGFP2-Orp1 monitors in vivo H2O2 and thiol redox integration and elucidates intracellular H2O2 dynamics during elicitor-induced oxidative burst in Arabidopsis. New Phytol. 221, 1649-1664.
|
|
Nietzel, T., Mostertz, J., Ruberti, C., Nee, G., Fuchs, P., Wagner, S., Moseler, A., Muller-Schussele, S.J., Benamar, A., Poschet, G., et al., 2020. Redox-mediated kick-start of mitochondrial energy metabolism drives resource-efficient seed germination. Proc. Natl. Acad. Sci. U. S. A. 117, 741-751.
|
|
Noctor, G., Cohen, M., Tremulot, L., Chatel-Innocenti, G., Van Breusegem, F., Mhamdi, A., 2024. Glutathione: a key modulator of plant defence and metabolism through multiple mechanisms. J. Exp. Bot. 75, 4549-4572.
|
|
Ogasawara, Y., Kaya, H., Hiraoka, G., Yumoto, F., Kimura, S., Kadota, Y., Hishinuma, H., Senzaki, E., Yamagoe, S., Nagata, K., et al., 2008. Synergistic activation of the Arabidopsis NADPH oxidase AtrbohD by Ca2+ and phosphorylation. J. Biol. Chem. 283, 8885-8892.
|
|
Okegawa, Y., Motohashi, K., 2015. Chloroplastic thioredoxin m functions as a major regulator of Calvin cycle enzymes during photosynthesis in vivo. Plant J. 84, 900-913.
|
|
Ondrej, V., Kitner, M., Dolezalova, I., Nadvornik, P., Navratilova, B., Lebeda, A., 2009. Chromatin structural rearrangement during dedifferentiation of protoplasts of Cucumis sativus L. Mol. Cells 27, 443-447.
|
|
Park, S.Y., Fung, P., Nishimura, N., Jensen, D.R., Fujii, H., Zhao, Y., Lumba, S., Santiago, J., Rodrigues, A., Chow, T.F., et al., 2009. Abscisic acid inhibits type 2C protein phosphatases via the PYR/PYL family of START proteins. Science 324, 1068-1071.
|
|
Parker, J., Balmant, K., Zhu, F., Zhu, N., Chen, S., 2015. cysTMTRAQ-an integrative method for unbiased thiol-based redox proteomics. Mol. Cell. Proteomics 14, 237-242.
|
|
Paulsen, C.E., Carroll, K.S., 2013. Cysteine-mediated redox signaling: chemistry, biology, and tools for discovery. Chem. Rev. 113, 4633-4679.
|
|
Pawson, T., 1995. Protein modules and signalling networks. Nature 373, 573-580.
|
|
Pedre, B., Talwar, D., Barayeu, U., Schilling, D., Luzarowski, M., Sokolowski, M., Glatt, S., Dick, T.P., 2023. 3-Mercaptopyruvate sulfur transferase is a protein persulfidase. Nat. Chem. Biol. 19, 507-517.
|
|
Pedre, B., Young, D., Charlier, D., Mourenza, A., Rosado, L.A., Marcos-Pascual, L., Wahni, K., Martens, E., de la Rubia, A.G., Belousov, V.V., et al., 2018. Structural snapshots of OxyR reveal the peroxidatic mechanism of H2O2 sensing. Proc. Natl. Acad. Sci. U. S. A. 115, E11623-E11632.
|
|
Pfister, A., Barberon, M., Alassimone, J., Kalmbach, L., Lee, Y., Vermeer, J.E., Yamazaki, M., Li, G., Maurel, C., Takano, J., et al., 2014. A receptor-like kinase mutant with absent endodermal diffusion barrier displays selective nutrient homeostasis defects. Elife 3, e03115.
|
|
Plskova, Z., Van Breusegem, F., Kerchev, P., 2024. Redox regulation of chromatin remodelling in plants. Plant Cell Environ. 47, 2780-2792.
|
|
Poole, L.B., 2015. The basics of thiols and cysteines in redox biology and chemistry. Free Radic. Biol. Med. 80, 148-157.
|
|
Pulido, P., Spinola, M.C., Kirchsteiger, K., Guinea, M., Pascual, M.B., Sahrawy, M., Sandalio, L.M., Dietz, K.J., Gonzalez, M., Cejudo, F.J., 2010. Functional analysis of the pathways for 2-Cys peroxiredoxin reduction in Arabidopsis thaliana chloroplasts. J. Exp. Bot. 61, 4043-4054.
|
|
Qin, G., Qu, M., Jia, B., Wang, W., Luo, Z., Song, C., Tao, W.A., Wang, P., 2023. FAT-switch-based quantitative S-nitrosoproteomics reveals a key role of GSNOR1 in regulating ER functions. Nat. Commun. 14, 3268.
|
|
Qu, J., Xiao, P., Wang, Y., Fang, T., Chen, H., Li, C., Liu, J.H., 2026. WRKY27-RAP2.7 regulatory module promotes cold tolerance via modulation of lignin biosynthesis and redox homeostasis by regulating cinnamyl alcohol dehydrogenase 7 and glutathione S-transferase F6. Plant Biotechnol. J. 24, 2021-2039.
|
|
Rajjou, L., Lovigny, Y., Groot, S.P., Belghazi, M., Job, C., Job, D., 2008. Proteome-wide characterization of seed aging in Arabidopsis: a comparison between artificial and natural aging protocols. Plant Physiol. 148, 620-641.
|
|
Ravanel, S., Block, M.A., Rippert, P., Jabrin, S., Curien, G., Rebeille, F., Douce, R., 2004. Methionine metabolism in plants: chloroplasts are autonomous for de novo methionine synthesis and can import S-adenosylmethionine from the cytosol. J. Biol. Chem. 279, 22548-22557.
|
|
Rekhter, D., Ludke, D., Ding, Y., Feussner, K., Zienkiewicz, K., Lipka, V., Wiermer, M., Zhang, Y., Feussner, I., 2019. Isochorismate-derived biosynthesis of the plant stress hormone salicylic acid. Science 365, 498-502.
|
|
Renziehausen, T., Dirr, A., Schmidt-Schippers, R., Flashman, E., Schippers, J., 2025. Oxygen sensing and plant adaptation to flooding in a changing climate. Philos. Trans. R. Soc. Lond. B Biol. Sci. 380, 20240238.
|
|
Retzer, K., Lacek, J., Skokan, R., Del Genio, C.I., Vosolsobe, S., Lankova, M., Malinska, K., Konstantinova, N., Zazimalova, E., Napier, R.M., et al., 2017. Evolutionary conserved cysteines function as cis-acting regulators of Arabidopsis PIN-FORMED 2 distribution. Int. J. Mol. Sci. 18, 2274.
|
|
Reyt, G., Ramakrishna, P., Salas-Gonzalez, I., Fujita, S., Love, A., Tiemessen, D., Lapierre, C., Morreel, K., Calvo-Polanco, M., Flis, P., et al., 2021. Two chemically distinct root lignin barriers control solute and water balance. Nat. Commun. 12, 2320.
|
|
Riondet, C., Desouris, J.P., Montoya, J.G., Chartier, Y., Meyer, Y., Reichheld, J.P., 2012. A dicotyledon-specific glutaredoxin GRXC1 family with dimer-dependent redox regulation is functionally redundant with GRXC2. Plant Cell Environ. 35, 360-373.
|
|
Rodriguez-Marin, F., Gallardo-Martinez, A.M., Hernandez, M.L., Gonzalez, M.C., Cejudo, F.J., Perez-Ruiz, J.M., 2026. 2-Cys peroxiredoxins and the chaperone cpHSP70 act in concert in chloroplast biogenesis in Arabidopsis seedlings. Plant Cell, koag096.
|
|
Roy, D., Mehra, P., Clark, L., Mukkawar, V., Bellande, K., Martin-Arevalillo, R., Ghosh, S., Ingole, K.D., Bhagat, P.K., Brown, A., et al., 2025. Redox-regulated Aux/IAA multimerization modulates auxin responses. Science 389, eadu1470.
|
|
Saleem, M., Fariduddin, Q., Castroverde, C.D.M., 2021. Salicylic acid: a key regulator of redox signalling and plant immunity. Plant Physiol. Biochem. 168, 381-397.
|
|
Sanchez-Vicente, I., Albertos, P., Sanz, C., Wybouw, B., De Rybel, B., Begara-Morales, J.C., Chaki, M., Mata-Perez, C., Barroso, J.B., Lorenzo, O., 2024. Reversible S-nitrosylation of bZIP67 by peroxiredoxin IIE activity and nitro-fatty acids regulates the plant lipid profile. Cell Rep. 43, 114091.
|
|
Scavo, A., Mauromicale, G., 2021. Crop allelopathy for sustainable weed management in agroecosystems: knowing the present with a view to the future. Agronomy 11, 2104.
|
|
Schieber, M., Chandel, N.S., 2014. ROS function in redox signaling and oxidative stress. Curr. Biol. 24, R453-R462.
|
|
Sell, S., Lindermayr, C., Durner, J., 2008. Identification of S-nitrosylated proteins in plants. Methods Enzymol. 440, 283-293.
|
|
Sevilla, F., Marti, M.C., De Brasi-Velasco, S., Jimenez, A., 2023. Redox regulation, thioredoxins, and glutaredoxins in retrograde signalling and gene transcription. J. Exp. Bot. 74, 5955-5969.
|
|
Shahul Hameed, U.F., Balakrishna, A., Wang, J.Y., Alvarez, D., Momin, A.A., Schwarzenberg, A., Al-Babili, S., Arold, S.T., 2025. Molecular basis for catalysis and regulation of the strigolactone catabolic enzyme CXE15. Nat. Commun. 16, 10290.
|
|
Shi, Y., Wang, D., Wang, C., Culler, A.H., Kreiser, M.A., Suresh, J., Cohen, J.D., Pan, J., Baker, B., Liu, J., 2015. Loss of GSNOR1 function leads to compromised auxin signaling and polar auxin transport. Mol. Plant 8, 1350-1365.
|
|
Shen, J., Zhang, J., Zhou, M., Zhou, H., Cui, B., Gotor, C., Romero, L.C., Fu, L., Yang, J., Foyer, C.H., et al., 2020. Persulfidation-based modification of cysteine desulfhydrase and the NADPH oxidase RBOHD controls guard cell abscisic acid signaling. Plant Cell 32, 1000-1017.
|
|
Sies, H., Belousov, V.V., Chandel, N.S., Davies, M.J., Jones, D.P., Mann, G.E., Murphy, M.P., Yamamoto, M., Winterbourn, C., 2022. Defining roles of specific reactive oxygen species (ROS) in cell biology and physiology. Nat. Rev. Mol. Cell Biol. 23, 499-515.
|
|
Song, R.F., Li, L., Guo, X.R., Liao, C.Y., Liu, W.C., 2026. H2O2 sulfenylates GRF8 to facilitate jasmonate signaling by relieving MYC2 inhibition in Arabidopsis. Mol. Cell 86, 2309-2324.e5.
|
|
Song, S., Wang, H., Sun, M., Tang, J., Zheng, B., Wang, X., Tan, Y.W., 2019. Reactive oxygen species-mediated BIN2 activity revealed by single-molecule analysis. New Phytol. 223, 692-704.
|
|
Sies, H., Mailloux, R.J., Jakob, U., 2024. Fundamentals of redox regulation in biology. Nat. Rev. Mol. Cell Biol. 25, 701-719.
|
|
Suda, H., Toyota, M., 2022. Integration of long-range signals in plants: a model for wound-induced Ca2+, electrical, ROS, and glutamate waves. Curr. Opin. Plant Biol. 69, 102270.
|
|
Sugiyama, T., Yoshida, K., 2025. Diversity and distribution of thioredoxin family proteins in photosynthetic organisms. Plant Cell Physiol. 66, 1677-1679.
|
|
Sun, S., Wang, L., Mao, H., Shao, L., Li, X., Xiao, J., Ouyang, Y., Zhang, Q., 2018. A G-protein pathway determines grain size in rice. Nat. Commun. 9, 851.
|
|
Tada, Y., Spoel, S.H., Pajerowska-Mukhtar, K., Mou, Z., Song, J., Wang, C., Zuo, J., Dong, X., 2008. Plant immunity requires conformational changes of NPR1 via S-nitrosylation and thioredoxins. Science 321, 952-956.
|
|
Telara, Y., Akter, S., Aroca, A., Piccigallo, L., Zhang, D., Novi, G., Lavilla-Puerta, M., Gunawardana, D.M., La Monaca, N., Lichtenauer, S., et al., 2025. Hydrogen sulfide modulates plant hypoxic responses through the persulfidation of plant cysteine oxidases. bioRxiv, 2025.11.05.686772.
|
|
Terrile, M.C., Paris, R., Calderon-Villalobos, L.I.A.C., Iglesias, M.J., Lamattina, L., Estelle, M., Casalongue, C.A., 2012. Nitric oxide influences auxin signaling through S-nitrosylation of the Arabidopsis TRANSPORT INHIBITOR RESPONSE 1 auxin receptor. Plant J. 70, 492-500.
|
|
Thormahlen, I., Zupok, A., Rescher, J., Leger, J., Weissenberger, S., Groysman, J., Orwat, A., Chatel-Innocenti, G., Issakidis-Bourguet, E., Armbruster, U., et al., 2017. Thioredoxins play a crucial role in dynamic acclimation of photosynthesis in fluctuating light. Mol. Plant 10, 168-182.
|
|
Tian, Y., Fan, M., Qin, Z., Lv, H., Wang, M., Zhang, Z., Zhou, W., Zhao, N., Li, X., Han, C., et al., 2018. Hydrogen peroxide positively regulates brassinosteroid signaling through oxidation of the BRASSINAZOLE-RESISTANT1 transcription factor. Nat. Commun. 9, 1063.
|
|
Toivola, J., Nikkanen, L., Dahlstrom, K.M., Salminen, T.A., Lepisto, A., Vignols, H.F., Rintamaki, E., 2013. Overexpression of chloroplast NADPH-dependent thioredoxin reductase in Arabidopsis enhances leaf growth and elucidates in vivo function of reductase and thioredoxin domains. Front. Plant Sci. 4, 389.
|
|
Tonks, N.K., 2006. Protein tyrosine phosphatases: from genes, to function, to disease. Nat. Rev. Mol. Cell Biol. 7, 833-846.
|
|
Torrens-Spence, M.P., Bobokalonova, A., Carballo, V., Glinkerman, C.M., Pluskal, T., Shen, A., Weng, J.K., 2019. PBS3 and EPS1 complete salicylic acid biosynthesis from isochorismate in Arabidopsis. Mol. Plant 12, 1577-1586.
|
|
Torres, M.A., Dangl, J.L., Jones, J.D., 2002. Arabidopsis gp91phox homologues AtrbohD and AtrbohF are required for accumulation of reactive oxygen intermediates in the plant defense response. Proc. Natl. Acad. Sci. U. S. A. 99, 517-522.
|
|
Trost, P., Fermani, S., Marri, L., Zaffagnini, M., Falini, G., Scagliarini, S., Pupillo, P., Sparla, F., 2006. Thioredoxin-dependent regulation of photosynthetic glyceraldehyde-3-phosphate dehydrogenase: autonomous vs. CP12-dependent mechanisms. Photosynth. Res. 89, 263-275.
|
|
Vanacker, H., Guichard, M., Bohrer, A.S., Issakidis-Bourguet, E., 2018. Redox regulation of monodehydroascorbate reductase by thioredoxin y in plastids revealed in the context of water stress. Antioxidants (Basel) 7, 183.
|
|
Vanneste, S., Friml, J., 2009. Auxin: a trigger for change in plant development. Cell 136, 1005-1016.
|
|
Verma, P.K., Verma, S., Tripathi, R.D., Chakrabarty, D., 2020. A rice glutaredoxin regulate the expression of aquaporin genes and modulate root responses to provide arsenic tolerance. Ecotoxicol. Environ. Saf. 195, 110471.
|
|
Vignane, T., Filipovic, M.R., 2023. Emerging chemical biology of protein persulfidation. Antioxid. Redox Signal. 39, 19-39.
|
|
Wang, H.Q., Zhao, X.Y., Xuan, W., Wang, P., Zhao, F.J., 2023a. Rice roots avoid asymmetric heavy metal and salinity stress via an RBOH-ROS-auxin signaling cascade. Mol. Plant 16, 1678-1694.
|
|
Wang, J., Wang, Y., Lv, Q., Wang, L., Du, J., Bao, F., He, Y.K., 2017. Nitric oxide modifies root growth by S-nitrosylation of plastidial glyceraldehyde-3-phosphate dehydrogenase. Biochem. Biophys. Res. Commun. 488, 88-94.
|
|
Wang, P., Du, Y., Hou, Y.J., Zhao, Y., Hsu, C.C., Yuan, F., Zhu, X., Tao, W.A., Song, C.P., Zhu, J.K., 2015a. Nitric oxide negatively regulates abscisic acid signaling in guard cells by S-nitrosylation of OST1. Proc. Natl. Acad. Sci. U. S. A. 112, 613-618.
|
|
Wang, P., Li, X., Wang, Y., Wang, W., Tian, S., Qin, G., 2021. Redox proteomic analysis reveals the involvement of oxidative post-translational modification in tomato fruit ripening. Postharvest Biol. Technol. 178, 111556.
|
|
Wang, P., Liu, W.C., Han, C., Wang, S., Bai, M.Y., Song, C.P., 2024a. Reactive oxygen species: multidimensional regulators of plant adaptation to abiotic stress and development. J. Integr. Plant Biol. 66, 330-367.
|
|
Wang, P., Zhu, J., Lang, Z., 2015b. Nitric oxide suppresses the inhibitory effect of abscisic acid on seed germination by S-nitrosylation of SnRK2 proteins. Plant Signal Behav. 10, e1031939.
|
|
Wang, S., Liu, M., Hu, D., Dong, Z., Zhao, Z., 2025a. Control of DNA demethylation by superoxide anion in plant stem cells. Nat. Chem. Biol. 21, 567-576.
|
|
Wang, Y., Song, S., Zhang, W., Deng, Q., Feng, Y., Tao, M., Kang, M., Zhang, Q., Yang, L., Wang, X., et al., 2025b. Deciphering phenylalanine-derived salicylic acid biosynthesis in plants. Nature 645, 208-217.
|
|
Wang, X., Liu, C., Li, T., Zhou, F., Sun, H., Li, F., Ma, Y., Jia, H., Zhang, X., Shi, W., et al., 2024b. Hydrogen sulfide antagonizes cytokinin to change root system architecture through persulfidation of CKX2 in Arabidopsis. New Phytol. 244, 1377-1390.
|
|
Wang, X., Shi, C., Hu, Y., Ma, Y., Yi, Y., Jia, H., Li, F., Sun, H., Li, T., Wang, X., et al., 2023b. Persulfidation maintains cytosolic G6PDs activity through changing tetrameric structure and competing cysteine sulfur oxidation under salt stress in Arabidopsis and tomato. New Phytol. 240, 626-643.
|
|
Wang, Y., Chu, C., 2020a. S-nitrosylation control of ROS and RNS homeostasis in plants: the switching function of catalase. Mol. Plant 13, 946-948.
|
|
Wang, Y., Liu, Z., Wang, P., Jiang, B., Lei, X., Wu, J., Dong, W., Gao, C., 2020b. A 2-Cys peroxiredoxin gene from Tamarix hispida improves salt stress tolerance in plants. BMC Plant Biol. 20, 360.
|
|
Wang, Y.Q., Feechan, A., Yun, B.W., Shafiei, R., Hofmann, A., Taylor, P., Xue, P., Yang, F.Q., Xie, Z.S., Pallas, J.A., et al., 2009. S-nitrosylation of AtSABP3 antagonizes the expression of plant immunity. J. Biol. Chem. 284, 2131-2137.
|
|
Wei, J., Liu, M., Zhao, D., Du, P., Yan, L., Liu, D., Shi, Q., Yang, C., Qin, G., Gong, B., 2025. Melatonin confers saline-alkali tolerance in tomato by alleviating nitrosative damage and S-nitrosylation of H+-ATPase 2. Plant Cell 37, koaf035.
|
|
Wei, L., Hou, X., Feng, L., Liu, Y., Kong, Y., Cui, A., Qiao, Y., Hu, D., Wang, C., Liu, H., et al., 2024a. SERK3A and SERK3B could be S-nitrosylated and enhance the salt resistance in tomato seedlings. Int. J. Biol. Macromol. 273, 133084.
|
|
Wei, X., Zhu, Y., Xie, W., Ren, W., Zhang, Y., Zhang, H., Dai, S., Huang, C.F., 2024b. H2O2 negatively regulates aluminum resistance via oxidation and degradation of the transcription factor STOP1. Plant Cell 36, 688-708.
|
|
Wong, J.H., Kim, Y.B., Ren, P.H., Cai, N., Cho, M.J., Hedden, P., Lemaux, P.G., Buchanan, B.B., 2002. Transgenic barley grain overexpressing thioredoxin shows evidence that the starchy endosperm communicates with the embryo and the aleurone. Proc. Natl. Acad. Sci. U. S. A. 99, 16325-16330.
|
|
Wu, B., Qi, F., Liang, Y., 2023. Fuels for ROS signaling in plant immunity. Trends Plant Sci. 28, 1124-1131.
|
|
Wu, F.H., Chi, Y., Jiang, Z.H., Xu, Y.Y., Xie, L., Huang, F.F., Wan, D., Ni, J., Yuan, F., Wu, X.M., et al., 2020. Hydrogen peroxide sensor HPCA1 is an LRR receptor kinase in Arabidopsis. Nature 578, 577-581.
|
|
Wu, Y., Zhang, D., Chu, J.Y., Boyle, P., Wang, Y., Brindle, I.D., De Luca, V., Despres, C., 2012. The Arabidopsis NPR1 protein is a receptor for the plant defense hormone salicylic acid. Cell Rep. 1, 639-647.
|
|
Yamagami, T., Tsuchisaka, A., Yamada, K., Haddon, W.F., Harden, L.A., Theologis, A., 2003. Biochemical diversity among the 1-amino-cyclopropane-1-carboxylate synthase isozymes encoded by the Arabidopsis gene family. J. Biol. Chem. 278, 49102-49112.
|
|
Yang, H., Mu, J., Chen, L., Feng, J., Hu, J., Li, L., Zhou, J.M., Zuo, J., 2015. S-nitrosylation positively regulates ascorbate peroxidase activity during plant stress responses. Plant Physiol. 167, 1604-1615.
|
|
Yang, Y., Zhao, Y., Zhao, W., Zhang, Y., Wang, H., Grant, M., Schafer, P., Meng, Y., Shan, W., 2025. Mitochondrial ROS trigger interorganellular signaling and prime ER processes to establish enhanced plant immunity. Sci. Adv. 11, eady9234.
|
|
Ying, Y., Yue, W., Wang, S., Li, S., Wang, M., Zhao, Y., Wang, C., Mao, C., Whelan, J., Shou, H., 2017. Two h-type thioredoxins interact with the E2 ubiquitin conjugase PHO2 to fine-tune phosphate homeostasis in rice. Plant Physiol. 173, 812-824.
|
|
Yu, L., Iqbal, S., Zhang, Y., Zhang, G., Ali, U., Lu, S., Yao, X., Guo, L., 2021. Proteome-wide identification of S-sulphenylated cysteines in Brassica napus. Plant Cell Environ. 44, 3571-3582.
|
|
Yuan, H.M., Liu, W.C., Lu, Y.T., 2017. CATALASE2 coordinates SA-mediated repression of both auxin accumulation and JA biosynthesis in plant defenses. Cell Host Microbe 21, 143-155.
|
|
Zakaria, F.R., Chen, C.Y., Li, J., Wang, S., Payne, G.F., Bentley, W.E., 2024. Redox active plant phenolic, acetosyringone, for electrogenetic signaling. Sci. Rep. 14, 9666.
|
|
Zandalinas, S.I., Fichman, Y., Mittler, R., 2020. Vascular bundles mediate systemic reactive oxygen signaling during light stress. Plant Cell 32, 3425-3435.
|
|
Zeng, J., Zhao, X., Liang, Z., Hidalgo, I., Gebert, M., Fan, P., Wenzl, C., Gornik, S.G., Lohmann, J.U., 2023. Nitric oxide controls shoot meristem activity via regulation of DNA methylation. Nat. Commun. 14, 8001.
|
|
Zhan, N., Wang, C., Chen, L., Yang, H., Feng, J., Gong, X., Ren, B., Wu, R., Mu, J., Li, Y., et al., 2018. S-nitrosylation targets GSNO reductase for selective autophagy during hypoxia responses in plants. Mol. Cell 71, 142-154.e6.
|
|
Zhang, H., Sun, B., Latif, M.Z., Liu, Y., Lv, L., Wu, T., Li, Y., Yin, Z., Lu, C., Zhao, H., et al., 2025a. Control of H2S synthesis by the monomer-oligomer transition of OsCBSX3 for modulating rice growth-immunity balance. Mol. Plant 18, 350-365.
|
|
Zhang, W., Liu, W., Wang, K., Cheng, H., Bai, X., Zhang, J., Wei, G., Chen, J., 2025b. Persulfidation of host NADPH oxidase RbohB by rhizobial 3-mercaptopyruvate sulfurtransferase maintains redox homeostasis and promotes symbiotic nodulation in soybean. Mol. Plant 18, 1843-1863.
|
|
Zhang, M.J., Cui, J.J., Wang, Z.M., Dong, Y.X., Gao, X.Q., 2023. GR1 and NTRA involved in pollen tube growth in the stigma of Arabidopsis. Planta 258, 1.
|
|
Zhang, Q., Cai, X., Wu, B., Tong, B., Xu, D., Wang, J., Cui, B., Yin, R., Lin, L., 2024. S-nitrosylation may inhibit the activity of COP1 in plant photomorphogenesis. Biochem. Biophys. Res. Commun. 719, 150096.
|
|
Zhang, W., Cheng, H., Yan, X., Suo, B., Wen, S., Liu, W., Wei, G., Chen, J., 2025c. H2S-mediated GH3.1 persulfidation regulates IAA homeostasis to enhance nodulation formation and nitrogen fixation in Robinia pseudoacacia. Mol. Plant Pathol. 26, e70145.
|
|
Zhang, W., Wang, Y., Li, W., Wei, Y., Wu, S., Zhuo, D., Ye, M., Chen, Y., Huang, W., Li, Y., et al., 2026. Temporal dynamics of protein phosphorylation and S-nitrosylation direct maize seed germination programs. Plant J. 126, e70835.
|
|
Zhang, Z.W., Fu, Y.F., Zhou, Y.H., Wang, C.Q., Lan, T., Chen, G.D., Zeng, J., Chen, Y.E., Yuan, M., Yuan, S., et al., 2019. Nitrogen and nitric oxide regulate Arabidopsis flowering differently. Plant Sci. 284, 177-184.
|
|
Zhang, Z.W., Luo, S., Zhang, G.C., Feng, L.Y., Zheng, C., Zhou, Y.H., Du, J.B., Yuan, M., Chen, Y.E., Wang, C.Q., et al., 2017. Nitric oxide induces monosaccharide accumulation through enzyme S-nitrosylation. Plant Cell Environ. 40, 1834-1848.
|
|
Zhao, H., Ma, L., Shen, J., Zhou, H., Zheng, Y., 2024. S-nitrosylation of the transcription factor MYB30 facilitates nitric oxide-promoted seed germination in Arabidopsis. Plant Cell 36, 367-382.
|
|
Zhao, S., Xie, Z., Chen, X., Shi, Y., Li, H., Li, Y., Chen, C., Zhou, M., Wang, W., 2026. Duet between stress granules and glutathionylation regulates cytosolic redox state to maintain proteostasis in Arabidopsis. Mol. Plant 19, 606-628.
|
|
Zhou, H., Huang, J., Willems, P., Van Breusegem, F., Xie, Y., 2023. Cysteine thiol-based post-translational modification: what do we know about transcription factors? Trends Plant Sci. 28, 415-428.
|
|
Zhou, H., Zhang, J., Shen, J., Zhou, H., Yuan, X., Xie, Y., 2020. Redox-based protein persulfidation in guard cell ABA signaling. Plant Signal Behav. 15, 1741987.
|
|
Zhou, H., Zhou, Y., Zhang, F., Guan, W., Su, Y., Yuan, X., Xie, Y., 2021a. Persulfidation of nitrate reductase 2 is involved in L-cysteine desulfhydrase-regulated rice drought tolerance. Int. J. Mol. Sci. 22, 12119.
|
|
Zhou, L., Gao, G., Tang, R., Liu, J., Wang, Y., Liang, Z., Tian, S., Qin, G., 2025. Redox modification of m6A demethylase SlALKBH2 in tomato regulates fruit ripening. Nat. Plants 11, 218-233.
|
|
Zhou, M., Liang, X., Liu, H., Liu, T., Liu, Y., Xue, S., 2026. Hydrogen sulphide signalling in plants: from persulfidation to metabolic regulation and stress response. Plant Cell Environ., pce.70520.
|
|
Zhou, M., Zhang, J., Shen, J., Zhou, H., Zhao, D., Gotor, C., Romero, L.C., Fu, L., Li, Z., Yang, J., et al., 2021b. Hydrogen sulfide-linked persulfidation of ABI4 controls ABA responses through the transactivation of MAPKKK18 in Arabidopsis. Mol. Plant 14, 921-936.
|
|
Zhu, B., Zhang, Y., Gao, R., Wu, Z., Zhang, W., Zhang, C., Zhang, P., Ye, C., Yao, L., Jin, Y., et al., 2025a. Complete biosynthesis of salicylic acid from phenylalanine in plants. Nature 645, 218-227.
|
|
Zhu, J.K., 2016. Abiotic stress signaling and responses in plants. Cell 167, 313-324.
|
|
Zhu, L., Chen, L., Wu, C., Shan, W., Cai, D., Lin, Z., Wei, W., Chen, J., Lu, W., Kuang, J., 2023. Methionine oxidation and reduction of the ethylene signaling component MaEIL9 are involved in banana fruit ripening. J. Integr. Plant Biol. 65, 150-166.
|
|
Zhu, M., Zhu, N., Song, W.Y., 2014. Thiol-based redox proteins in abscisic acid and methyl jasmonate signaling in Brassica napus guard cells. Plant J. 78, 491-515.
|
|
Zhu, W., Wang, L., Wang, J., Zhan, N., Shi, Z., Sun, Y., Lv, Q., Hu, Y., Bao, F., Li, L., et al., 2025b. Nitric oxide delays floral transition in Arabidopsis by inhibiting histone deacetylases HDA5 and HDA6. Plant J. 123, e70373.
|