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Biogenesis, features, and functions of coding transcripts-derived siRNAs in plants

Yan Yan Yuelin Liu Hongwei Guo

Yan Yan, Yuelin Liu, Hongwei Guo. Biogenesis, features, and functions of coding transcripts-derived siRNAs in plants[J]. 遗传学报. doi: 10.1016/j.jgg.2026.02.015
引用本文: Yan Yan, Yuelin Liu, Hongwei Guo. Biogenesis, features, and functions of coding transcripts-derived siRNAs in plants[J]. 遗传学报. doi: 10.1016/j.jgg.2026.02.015
Yan Yan, Yuelin Liu, Hongwei Guo. Biogenesis, features, and functions of coding transcripts-derived siRNAs in plants[J]. Journal of Genetics and Genomics. doi: 10.1016/j.jgg.2026.02.015
Citation: Yan Yan, Yuelin Liu, Hongwei Guo. Biogenesis, features, and functions of coding transcripts-derived siRNAs in plants[J]. Journal of Genetics and Genomics. doi: 10.1016/j.jgg.2026.02.015

Biogenesis, features, and functions of coding transcripts-derived siRNAs in plants

doi: 10.1016/j.jgg.2026.02.015
基金项目: 

We apologize to the colleagues whose works are not cited here because of space limitation.This work was supported by National Natural Science Foundation of China (32261160572 to H.G.), New Cornerstone Science Foundation (NCI202235 to H.G), and China Postdoctoral Science Foundation (2025M782656 to Y.Y.)

详细信息
    通讯作者:

    Hongwei Guo,E-mail:guohw@sustech.edu.cn

Biogenesis, features, and functions of coding transcripts-derived siRNAs in plants

Funds: 

We apologize to the colleagues whose works are not cited here because of space limitation.This work was supported by National Natural Science Foundation of China (32261160572 to H.G.), New Cornerstone Science Foundation (NCI202235 to H.G), and China Postdoctoral Science Foundation (2025M782656 to Y.Y.)

  • 摘要: Plant small RNAs (sRNAs) are pivotal regulators of development, genome stability, and environmental adaptation. In plants, endogenous sRNAs are broadly grouped into microRNAs (miRNAs) and small interfering RNAs (siRNAs). siRNAs can be further subdivided into those derived from noncoding transcripts, such as transposable elements and long noncoding RNAs, and those generated from protein-coding transcripts. Among these, coding transcript-derived siRNAs (ct-siRNAs) represent a critical link between RNA quality control (RQC) and post-transcriptional gene silencing. When RNA decay and RQC pathways are genetically impaired or attenuated by environmental and biotic stresses, aberrant protein-coding mRNAs can be converted into ct-siRNAs, with 22-nt species efficiently triggering secondary siRNA amplification. ct-siRNA production is highly selective, concentrating at hotspot loci whose transcripts are shaped by characteristic RNA features, translational status, and contributes to enhanced stress resistance by modulating defense- and metabolism-related gene networks. ct-siRNAs bridge mRNA surveillance and growth defense trade-offs, acting as endogenous danger signals to expand post-transcriptional regulation and improve crop resilience. This review summarizes recent advances in endogenous sRNA biology with a particular focus on ct-siRNAs, detailing their biogenesis, regulatory properties, and biological functions. We further discuss their physiological significance and highlight key open questions and future directions in this emerging field.
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出版历程
  • 收稿日期:  2025-12-14
  • 录用日期:  2026-02-13
  • 修回日期:  2026-02-11
  • 网络出版日期:  2026-02-28

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