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USP21 deubiquitinates DPYSL2 and enhances its centrosomal abundance to promote cilium formation

Ting Song Peng Zhou Fengguo Zhang Chunli Liu Xueqing Han Yiyang Yue Mingzheng Hu Shaodong Yan Qingchao Li Min Liu Jun Zhou Huijie Zhao

Ting Song, Peng Zhou, Fengguo Zhang, Chunli Liu, Xueqing Han, Yiyang Yue, Mingzheng Hu, Shaodong Yan, Qingchao Li, Min Liu, Jun Zhou, Huijie Zhao. USP21 deubiquitinates DPYSL2 and enhances its centrosomal abundance to promote cilium formation[J]. 遗传学报, 2026, 53(2): 256-268. doi: 10.1016/j.jgg.2025.06.006
引用本文: Ting Song, Peng Zhou, Fengguo Zhang, Chunli Liu, Xueqing Han, Yiyang Yue, Mingzheng Hu, Shaodong Yan, Qingchao Li, Min Liu, Jun Zhou, Huijie Zhao. USP21 deubiquitinates DPYSL2 and enhances its centrosomal abundance to promote cilium formation[J]. 遗传学报, 2026, 53(2): 256-268. doi: 10.1016/j.jgg.2025.06.006
Ting Song, Peng Zhou, Fengguo Zhang, Chunli Liu, Xueqing Han, Yiyang Yue, Mingzheng Hu, Shaodong Yan, Qingchao Li, Min Liu, Jun Zhou, Huijie Zhao. USP21 deubiquitinates DPYSL2 and enhances its centrosomal abundance to promote cilium formation[J]. Journal of Genetics and Genomics, 2026, 53(2): 256-268. doi: 10.1016/j.jgg.2025.06.006
Citation: Ting Song, Peng Zhou, Fengguo Zhang, Chunli Liu, Xueqing Han, Yiyang Yue, Mingzheng Hu, Shaodong Yan, Qingchao Li, Min Liu, Jun Zhou, Huijie Zhao. USP21 deubiquitinates DPYSL2 and enhances its centrosomal abundance to promote cilium formation[J]. Journal of Genetics and Genomics, 2026, 53(2): 256-268. doi: 10.1016/j.jgg.2025.06.006

USP21 deubiquitinates DPYSL2 and enhances its centrosomal abundance to promote cilium formation

doi: 10.1016/j.jgg.2025.06.006
基金项目: 

We thank Heng Guo (Electron Microscopy Core) and Ying Li (Light Microscopy Core) at Shandong Normal University for their assistance in imaging. We thank Chunhong Yang (Shandong Academy of Agricultural Sciences) for instrumental and technical support. This work was supported by the National Natural Science Foundation of China (32300694, 32270807, 32170829, and 31900538), the Shandong Natural Science Foundation (2022HWYQ-075), and the Taishan Scholar Foundation of Shandong Province (tsqn202211109).

详细信息
    通讯作者:

    Jun Zhou,E-mail:junzhou@sdnu.edu.cn

    Huijie Zhao,E-mail:huijiezhao@sdnu.edu.cn

USP21 deubiquitinates DPYSL2 and enhances its centrosomal abundance to promote cilium formation

Funds: 

We thank Heng Guo (Electron Microscopy Core) and Ying Li (Light Microscopy Core) at Shandong Normal University for their assistance in imaging. We thank Chunhong Yang (Shandong Academy of Agricultural Sciences) for instrumental and technical support. This work was supported by the National Natural Science Foundation of China (32300694, 32270807, 32170829, and 31900538), the Shandong Natural Science Foundation (2022HWYQ-075), and the Taishan Scholar Foundation of Shandong Province (tsqn202211109).

  • 摘要: Cilia are microtubule-based organelles projecting from the cell surface with important sensory and motility functions. Ciliary defects are associated with diverse diseases collectively known as ciliopathies. However, the molecular mechanisms that govern ciliogenesis remain not fully understood. Here, we demonstrate that ubiquitin-specific protease 21 (USP21) is indispensable for cilium formation through its deubiquitinating activity. Usp21 knockout mice exhibit ciliary defects in multiple organs, such as the kidney, liver, and trachea. Our data also reveal a constant localization of USP21 at the centrosome and basal body during ciliogenesis. Mechanistically, USP21 interacts with dihydropyrimidinase-like 2 (DPYSL2) at the centrosome and removes lysine 48-linked ubiquitination from DPYSL2. Loss of USP21 leads to the proteasomal degradation of DPYSL2 and causes a significant reduction in its centrosome abundance, ultimately resulting in ciliary defects. These findings thus identify a critical role for the USP21–DPYSL2 axis in ciliogenesis and have important implications for health and disease.
  • Al-Hakim, A.K., Bashkurov, M., Gingras, A.C., Durocher, D.,Pelletier, L., 2012. Interaction proteomics identify NEURL4 and the HECT E3 ligase HERC2 as novel modulators of centrosome architecture. Mol. Cell Proteomics 11, M111 014233.
    An, T., Lu, Y., Yan, X.,Hou, J., 2022. Insights into the properties, biological functions, and regulation of USP21. Front. Pharmacol. 13, 944089.
    Bai, Y., Wei, C., Li, P., Sun, X., Cai, G., Chen, X.,Hong, Q., 2022. Primary cilium in kidney development, function and disease. Front. Endocrinol. 13, 952055.
    Bujakowska, K.M., Liu, Q.,Pierce, E.A., 2017. Photoreceptor cilia and retinal ciliopathies. Cold Spring Harb. Perspect. Biol. 9, a028274.
    Chen, R., Zhang, H., Li, L., Li, J., Xie, J., Weng, J., Tan, H., Liu, Y., Guo, T.,Wang, M., 2024. Roles of ubiquitin-specific proteases in inflammatory diseases. Front. Immunol. 15, 1258740.
    Chen, Y., Wang, L., Jin, J., Luan, Y., Chen, C., Li, Y., Chu, H., Wang, X., Liao, G., Yu, Y., et al., 2017. p38 inhibition provides anti-DNA virus immunity by regulation of USP21 phosphorylation and STING activation. J. Exp. Med. 214, 991-1010.
    Czarnecki, P.G.,Shah, J.V., 2012. The ciliary transition zone: from morphology and molecules to medicine. Trends Cell Biol. 22, 201-210.
    Fan, Y., Mao, R., Yu, Y., Liu, S., Shi, Z., Cheng, J., Zhang, H., An, L., Zhao, Y., Xu, X., et al., 2014. USP21 negatively regulates antiviral response by acting as a RIG-I deubiquitinase. J. Exp. Med. 211, 313-328.
    Feuer, K.L., Peng, X., Yovo, C.K.,Avramopoulos, D., 2023. DPYSL2/CRMP2 isoform B knockout in human iPSC-derived glutamatergic neurons confirms its role in mTOR signaling and neurodevelopmental disorders. Mol. Psychiatry 28, 4353-4362.
    Fiallos-Oliveros, C.,Ohshima, T., 2020. Dpysl2 (CRMP2) is required for the migration of facial branchiomotor neurons in the developing zebrafish embryo. Int. J. Dev. Biol. 64, 479-484.
    Fry, A.M., Leaper, M.J.,Bayliss, R., 2014. The primary cilium: guardian of organ development and homeostasis. Organogenesis 10, 62-68.
    Gopalakrishnan, J., Feistel, K., Friedrich, B.M., Grapin-Botton, A., Jurisch-Yaksi, N., Mass, E., Mick, D.U., Muller, R.U., May-Simera, H., Schermer, B., et al., 2023. Emerging principles of primary cilia dynamics in controlling tissue organization and function. EMBO J. 42, e113891.
    Gupta, G.D., Coyaud, E., Goncalves, J., Mojarad, B.A., Liu, Y., Wu, Q., Gheiratmand, L., Comartin, D., Tkach, J.M., Cheung, S.W., et al., 2015. A dynamic protein interaction landscape of the human centrosome-cilium interface. Cell 163, 1484-1499.
    Hensley, K.,Kursula, P., 2016. Collapsin response mediator protein-2 (CRMP2) is a plausible etiological factor and potential therapeutic target in Alzheimer's disease: comparison and contrast with microtubule-associated protein Tau. J. Alzheimers Dis. 53, 1-14.
    Hensley, K., Venkova, K., Christov, A., Gunning, W.,Park, J., 2011. Collapsin response mediator protein-2: an emerging pathologic feature and therapeutic target for neurodisease indications. Mol. Neurobiol. 43, 180-191.
    Hilgendorf, K.I., Myers, B.R.,Reiter, J.F., 2024. Emerging mechanistic understanding of cilia function in cellular signalling. Nat. Rev. Mol. Cell Biol. 25, 555-573.
    Hong, R., Tan, Y., Tian, X., Huang, Z., Wang, J., Ni, H., Yang, J., Bu, W., Yang, S., Li, T., et al., 2024. XIAP-mediated degradation of IFT88 disrupts HSC cilia to stimulate HSC activation and liver fibrosis. EMBO Rep. 25, 1055-1074.
    Hong, Y., Lee, S.O., Oh, C., Kang, K., Ryoo, J., Kim, D.,Ahn, K., 2021. USP21 deubiquitinase regulates AIM2 inflammasome activation. J. Immunol. 207, 1926-1936.
    Hossain, D., Javadi Esfehani, Y., Das, A.,Tsang, W.Y., 2017. Cep78 controls centrosome homeostasis by inhibiting EDD-DYRK2-DDB1(Vpr)(BP). EMBO Rep. 18, 632-644.
    Ip, J.P., Fu, A.K.,Ip, N.Y., 2014. CRMP2: functional roles in neural development and therapeutic potential in neurological diseases. Neuroscientist 20, 589-598.
    Ishikawa, H.,Marshall, W.F., 2011. Ciliogenesis: building the cell's antenna. Nat. Rev. Mol. Cell Biol. 12, 222-234.
    Ji, W., Tang, Z., Chen, Y., Wang, C., Tan, C., Liao, J., Tong, L.,Xiao, G., 2022. Ependymal cilia: physiology and role in hydrocephalus. Front. Mol. Neurosci. 15, 927479.
    Kasahara, K., Kawakami, Y., Kiyono, T., Yonemura, S., Kawamura, Y., Era, S., Matsuzaki, F., Goshima, N.,Inagaki, M., 2014. Ubiquitin-proteasome system controls ciliogenesis at the initial step of axoneme extension. Nat. Commun. 5, 5081.
    Li, F., Ling, Q., Lian, J., Chen, Y., Hu, C., Yang, M., Zhang, X., Li, C., Mao, S., Ye, W., et al., 2023. Dihydropyrimidinase-like 2 can serve as a novel therapeutic target and prognostic biomarker in acute myeloid leukemia. Cancer Med. 12, 8319-8330.
    Li, W., Cui, K., Prochownik, E.V.,Li, Y., 2018. The deubiquitinase USP21 stabilizes MEK2 to promote tumor growth. Cell Death Dis. 9, 482.
    Li, Y.,Reverter, D., 2021. Molecular mechanisms of DUBs regulation in signaling and disease. Int. J. Mol. Sci. 22, 986.
    Lyu, Q., Li, Q., Zhou, J.,Zhao, H., 2024. Formation and function of multiciliated cells. J. Cell Biol. 223, e202307150.
    Madugalle, S.U., Liau, W.S., Zhao, Q., Li, X., Gong, H., Marshall, P.R., Periyakaruppiah, A., Zajaczkowski, E.L., Leighton, L.J., Ren, H., et al., 2023. Synapse-enriched m6A-modified Malat1 interacts with the novel m6A reader, DPYSL2, and is required for fear-extinction memory. J. Neurosci. 43, 7084-7100.
    Massa, F., Tammaro, R., Prado, M.A., Cesana, M., Lee, B.H., Finley, D., Franco, B.,Morleo, M., 2019. The deubiquitinating enzyme Usp14 controls ciliogenesis and Hedgehog signaling. Hum. Mol. Genet. 28, 764-777.
    May, E.A., Sroka, T.J.,Mick, D.U., 2021. Phosphorylation and ubiquitylation regulate protein trafficking, signaling, and the biogenesis of primary cilia. Front. Cell Dev. Biol. 9, 664279.
    Mercey, O., Mukherjee, S., Guichard, P.,Hamel, V., 2024. The molecular architecture of the ciliary transition zones. Curr. Opin. Cell Biol. 88, 102361.
    Mill, P., Christensen, S.T.,Pedersen, L.B., 2023. Primary cilia as dynamic and diverse signalling hubs in development and disease. Nat. Rev. Genet. 24, 421-441.
    Moutal, A., White, K.A., Chefdeville, A., Laufmann, R.N., Vitiello, P.F., Feinstein, D., Weimer, J.M.,Khanna, R., 2019. Dysregulation of CRMP2 post-translational modifications drive its pathological functions. Mol. Neurobiol. 56, 6736-6755.
    Nakamura, F., Ohshima, T.,Goshima, Y., 2020. Collapsin response mediator proteins: their biological functions and pathophysiology in neuronal development and regeneration. Front. Cell Neurosci. 14, 188.
    Ou, Y., Zhang, Y., Cheng, M., Rattner, J.B., Dobrinski, I.,van der Hoorn, F.A., 2012. Targeting of CRMP-2 to the primary cilium is modulated by GSK-3β. PLoS ONE 7, e48773.
    Palla, A.R., Hilgendorf, K.I., Yang, A.V., Kerr, J.P., Hinken, A.C., Demeter, J., Kraft, P., Mooney, N.A., Yucel, N., Burns, D.M., et al., 2022. Primary cilia on muscle stem cells are critical to maintain regenerative capacity and are lost during aging. Nat. Commun. 13, 1439.
    Park, K.,Leroux, M.R., 2022. Composition, organization and mechanisms of the transition zone, a gate for the cilium. EMBO Rep. 23, e55420.
    Peng, L., Hu, Y., Chen, D., Linghu, R., Wang, Y., Kou, X., Yang, J.,Jiao, S., 2016. Ubiquitin specific protease 21 upregulation in breast cancer promotes cell tumorigenic capability and is associated with the NOD-like receptor signaling pathway. Oncol. Lett. 12, 4531-4537.
    Rape, M., 2018. Ubiquitylation at the crossroads of development and disease. Nat. Rev. Mol. Cell Biol. 19, 59-70.
    Reiter, J.F.,Leroux, M.R., 2017. Genes and molecular pathways underpinning ciliopathies. Nat. Rev. Mol. Cell Biol. 18, 533-547.
    Ryan, K.A.,Pimplikar, S.W., 2005. Activation of GSK-3 and phosphorylation of CRMP2 in transgenic mice expressing APP intracellular domain. J. Cell Biol. 171, 327-335.
    Sahtoe, D.D.,Sixma, T.K., 2015. Layers of DUB regulation. Trends Biochem. Sci. 40, 456-467.
    Shearer, R.F.,Saunders, D.N., 2016. Regulation of primary cilia formation by the ubiquitin-proteasome system. Biochem. Soc. Trans. 44, 1265-1271.
    Shen, X.L., Yuan, J.F., Qin, X.H., Song, G.P., Hu, H.B., Tu, H.Q., Song, Z.Q., Li, P.Y., Xu, Y.L., Li, S., et al., 2022. LUBAC regulates ciliogenesis by promoting CP110 removal from the mother centriole. J. Cell Biol. 221, e202105092.
    Shiromizu, T., Yuge, M., Kasahara, K., Yamakawa, D., Matsui, T., Bessho, Y., Inagaki, M.,Nishimura, Y., 2020. Targeting E3 ubiquitin ligases and deubiquitinases in ciliopathy and cancer. Int. J. Mol. Sci. 21, 5962.
    Snyder, N.A.,Silva, G.M., 2021. Deubiquitinating enzymes (DUBs): regulation, homeostasis, and oxidative stress response. J. Biol. Chem. 297, 101077.
    Song, T., Yang, Y., Zhou, P., Ran, J., Zhang, L., Wu, X., Xie, W., Zhong, T., Liu, H., Liu, M., et al., 2022. ENKD1 promotes CP110 removal through competing with CEP97 to initiate ciliogenesis. EMBO Rep. 23, e54090.
    Song, T.,Zhou, J., 2020. Primary cilia in corneal development and disease. Zool. Res. 41, 495-502.
    Tian, X., Zhao, H.,Zhou, J., 2023. Organization, functions, and mechanisms of the BBSome in development, ciliopathies, and beyond. Elife 12, e87623.
    Togashi, K., Hasegawa, M., Nagai, J., Tonouchi, A., Masukawa, D., Hensley, K., Goshima, Y.,Ohshima, T., 2019. Genetic suppression of collapsin response mediator protein 2 phosphorylation improves outcome in methyl-4-phenyl-1,2,3,6-tetrahydropyridine-induced Parkinson's model mice. Genes Cells 24, 31-40.
    Toulis, V., Garcia-Monclus, S., de la Pena-Ramirez, C., Arenas-Galnares, R., Abril, J.F., Todi, S.V., Khan, N., Garanto, A., Costa, M.D.C.,Marfany, G., 2020. The deubiquitinating enzyme Ataxin-3 regulates ciliogenesis and phagocytosis in the retina. Cell Rep. 33, 108360.
    Urbe, S., Liu, H., Hayes, S.D., Heride, C., Rigden, D.J.,Clague, M.J., 2012. Systematic survey of deubiquitinase localization identifies USP21 as a regulator of centrosome- and microtubule-associated functions. Mol. Biol. Cell 23, 1095-1103.
    Van De Weghe, J.C., Gomez, A.,Doherty, D., 2022. The Joubert-Meckel-Nephronophthisis spectrum of ciliopathies. Annu. Rev. Genomics Hum. Genet. 23, 301-329.
    Vogel, P., Read, R.W., Hansen, G.M., Payne, B.J., Small, D., Sands, A.T.,Zambrowicz, B.P., 2012. Congenital hydrocephalus in genetically engineered mice. Vet. Pathol. 49, 166-181.
    Waters, A.M.,Beales, P.L., 2011. Ciliopathies: an expanding disease spectrum. Pediatr. Nephrol. 26, 1039-1056.
    Williamson, R., van Aalten, L., Mann, D.M., Platt, B., Plattner, F., Bedford, L., Mayer, J., Howlett, D., Usardi, A., Sutherland, C., et al., 2011. CRMP2 hyperphosphorylation is characteristic of Alzheimer's disease and not a feature common to other neurodegenerative diseases. J. Alzheimers Dis. 27, 615-625.
    Wu, Y.J., Nai, A.T., He, G.C., Xiao, F., Li, Z.M., Tang, S.Y., Liu, Y.P.,Ai, X.H., 2021. DPYSL2 as potential diagnostic and prognostic biomarker linked to immune infiltration in lung adenocarcinoma. World J. Surg. Oncol. 19, 274.
    Xie, S., Naslavsky, N.,Caplan, S., 2024. Emerging insights into CP110 removal during early steps of ciliogenesis. J. Cell Sci. 137, jcs261579.
    Xiong, L.L., Qiu, D.L., Xiu, G.H., Al-Hawwas, M., Jiang, Y., Wang, Y.C., Hu, Y., Chen, L., Xia, Q.J.,Wang, T.H., 2020. DPYSL2 is a novel regulator for neural stem cell differentiation in rats: revealed by Panax notoginseng saponin administration. Stem Cell Res. Ther. 11, 155.
    Xu, J., 2005. Preparation, culture, and immortalization of mouse embryonic fibroblasts. Curr. Protoc. Mol. Biol. Chapter 28, Unit 28 21.
    Xu, P., Xiao, H., Yang, Q., Hu, R., Jiang, L., Bi, R., Jiang, X., Wang, L., Mei, J., Ding, F., et al., 2020. The USP21/YY1/SNHG16 axis contributes to tumor proliferation, migration, and invasion of non-small-cell lung cancer. Exp. Mol. Med. 52, 41-55.
    Yang, S., Yan, H., Wu, Y., Shan, B., Zhou, D., Liu, X., Mao, X., Zhou, S., Zhao, Q.,Xia, H., 2021. Deubiquitination and stabilization of PD-L1 by USP21. Am. J. Transl. Res. 13, 12763-12774.
    Yang, Y., Ran, J., Liu, M., Li, D., Li, Y., Shi, X., Meng, D., Pan, J., Ou, G., Aneja, R., et al., 2014. CYLD mediates ciliogenesis in multiple organs by deubiquitinating Cep70 and inactivating HDAC6. Cell Res. 24, 1342-1353.
    Yee, L.E.,Reiter, J.F., 2015. Ciliary vesicle formation: a prelude to ciliogenesis. Dev. Cell 32, 665-666.
    Yoshimura, T., Kawano, Y., Arimura, N., Kawabata, S., Kikuchi, A.,Kaibuchi, K., 2005. GSK-3beta regulates phosphorylation of CRMP-2 and neuronal polarity. Cell 120, 137-149.
    Zhao, H., Khan, Z.,Westlake, C.J., 2023. Ciliogenesis membrane dynamics and organization. Semin. Cell Dev. Biol. 133, 20-31.
    Zi, X., Li, Q., Lu, Y., Lyu, Q., Guo, H., Meng, X., Zhou, J.,Zhao, H., 2024. CCDC181 is required for proper spermiogenesis in mice. J. Genet. Genomics 51, 1327-1330.
    Zou, J., Huang, R., Chen, Y., Huang, X., Li, H., Liang, P.,Chen, S., 2021. Dihydropyrimidinase like 2 promotes bladder cancer progression via pyruvate kinase M2-induced aerobic glycolysis and epithelial-mesenchymal transition. Front. Cell Dev. Biol. 9, 641432.
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  • 收稿日期:  2025-03-24
  • 录用日期:  2025-06-28
  • 修回日期:  2025-06-27
  • 刊出日期:  2026-02-10

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